Name: Sriranga Kashyap
Type: User
Company: University Health Network
Bio: Neuroimaging researcher with a background in biotech engineering and pre-clinical research. Curious about everything.
Twitter: srirangakashyap
Location: Toronto, Canada
Sriranga Kashyap's Projects
Super nifty AFNI script to MPRAGEise your MP2RAGEs
Advanced Normalization Tools (ANTs)
Advanced Normalization Tools in Python
A reimplementation of MAGeTbrain using only ANTs tools.
Use python's argparse module in shell scripts
Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space
Structure-preserving denoising using FSL's SUSAN
BIDScoin converts your source-level neuroimaging data to BIDS
This is a repository of wiki, code and containers for post-processing data acquired using the BRAIN-TO imaging protocols on a Siemens Prisma 3 T
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
:open_file_folder: A DataLad dataset for CONP
Dockerfile for PyPRF
ANTs-based commandline utilities for (1) consistent, super-fast defacing of anatomical MRI images (2) dielectric pad masking
Binaries for greedy and c3d tools
Myelin content based human habenula segmentation from anatomical MRI
Processing pipelines for the HCP
A compendium of tools to process hires fMRI data. Tested and developed on small field-of-view, sub-millimetre spatial resolution acquisitions.
A pipeline which performs iterative classification and bias field correction of T1-weighted MRIs
Stand alone fMRI software suite for layer-fMRI analyses.
Auxiliary scripts, bits & pieces built around LayNii
Extra miscellaneous scripts for minc-toolkit
MP2RAGE Scripts - T1 map correction & Background noise removal
User-friendly MP2RAGE scripts with a single YAML input.
mp2rageR is an R implementation based off of MATLAB code made publicly available by José P. Marques. See vignettes for help.
A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
Generate a ready-to-import gradient table for a multi-shell DWI acquisition using Emmanuel Caruyer et al., 2013 uniform schemes in a Siemens scanner.
A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
Scripts to prepare MP2RAGE for Freesurfer
Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data