Comments (1)
Resolved the issue -> it turns out that the epsilon values used were wrong, and scampit wrote a script to resolve that.
from egem.
Related Issues (20)
- Exploratory analysis of histone marker and metabolic gene expression
- Histone reader, writer, and eraser expression and individual histone marker expression
- Adding individual histone writer and eraser reactions to metabolic model
- Add PTM nodes into metabolic network
- Stratify CCLE cell lines to a high flux and low flux group to perform similar analyses to Shen et al.,
- Show all reactions even when performing histone only optimizations HOT 1
- Create a normoxic and hypoxic metabolic model
- Fix medium conditions HOT 3
- Complete end of summer checklist
- - [ ] Add other acylation reactions
- correlation plots between gene expression and histone markers
- - [ ] Be able to capture new sources of lipids to the metabolic model if they are in medium components
- - [ ] Add individual histone markers as individual nodes in the metabolic model
- - [ ] Use RECON3 as the base metabolic model for lipid reactions
- Fix recon1 rxngenemat HOT 1
- Fix leaks in exchange and demand reactions HOT 1
- Make module for seashore-ludlow analysis
- Metabolic sensitivity heatmaps
- Issue with the SRA case in metabolic_sensitivity
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from egem.