Name: Siddarthan Venkatachalam
Type: User
Company: National Centre for Polar and Ocean Research, Ministry of Earth Sciences
Bio: Well, I am no spring chicken anymore! Enthusiastic researcher in #microbialecology from alpine to polar environments. Post-doc at NCPOR, Goa, India
Location: Goa, India
Siddarthan Venkatachalam's Projects
This repo collects the list of learning online resources related to microbiome computational science and tools.
A tool to automate analyses in admixture, a program used for detecting population structure with SNP data.
Scripts used for Atlantis Massif crustal and sediment microbial analysis
Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes
A tool for drawing ANI clustermap between all-vs-all microbial genomes using fastANI & seaborn
ATLAS - Three commands to start analyzing your metagenome data
Similarity networks of biosynthetic gene clusters
Bioinformatics in Python
a versatile toolkit for processing and analyzing diverse types of sequence data
CAMITAX: Taxon labels for microbial genomes
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
Genome-resolved metagenomics suggests a mutualistic 2 relationship between Mycoplasma and salmonid hosts
Bacterial genomes finishing tool for structural insights on draft genomes
A example of how to perform coverage-based functional analysis in a MAG-centric view across multiple samples
A repository with a general dada2 pipeline for amplicon processing
DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
Codebase for the collaboration of Dryad and Dash data publication and curation services.
Long read metagenomics practical at EBAME18
The tutorials developed by Chris Quince, Rob James and Sébastien Raguideau in EBAME7 2022
Toolbox for comparative genomics of MAGs
Bioinformatic pipeline and data processing steps used to analyze eukaryotic metatranscriptomes
All scripts used for generation of data in Family Matters manuscript
quality filtering tool for long reads
Directory containing example result visualizations and scripts for generating figures and tables