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bsms222_101_kim

BSMS222 Biostatics

colabfold

Making Protein folding accessible to all!

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

eccb2022_sc_funcomics

Functional analysis of single-cell transcriptomics

enformer_deepmind

Navigating Enformer ✨ from Google Deepmind - Clarify the input sequence usage.

free-programming-books

:books: Freely available programming books

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

immuneresistance

This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".

luca

Single-cell Lung Cancer Atlas with 1.2M cells

m6a_mazter_study

An R program to calculate cleavage efficiency in MAZTER-seq derived data - This repo was originally created by Schwartzlab. Using and updating the codes for my own mazter_seq analysis.

meripseqpipe

MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.

meripseqpipe_2022

MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.

ohmyzsh

🙃 A delightful community-driven (with 1800+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, OSX, hub, docker, homebrew, node, php, python, etc), 140+ themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

powerlevel10k

A Zsh theme

python_notes

🐾 A small place that leaves the traces of Python study.

rafalabs

Rmd source files for the HarvardX series PH525x (this repo is forked from genomicsclass/labs)

reanalysis_mathys_2019

A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) using a standardised data processing and pseudobulk differential expression approach

rosmap_snrnaseq_pfc

scmlnet

Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks

single-nuclei-epigenomic-and-transcriptomic-landscape-in-alzheimer-disease

Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease

ssun1116.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

til

✍🏻 Today I Learned - Bioinformatics | DeepLearning | Statistics and ... Anything Else !

transcriptutorial

This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL

velocyto.r

RNA velocity estimation in R