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ageing_of_blood

Scripts for assessing the ageing of human blood.

algbioinfo

and

Documents that describe how to successfully build the Perculator software.

app_bioinfo

bb2490

Course material for BB2490

benchmark_fido

Alicia Menéndez Hurtado's scripts for benchmarking Fido

bibook

brian_pi0

Test of percolator's behavior on cases with extremely low values of pi_0

cb2030

Course material for CB2030

centos_runner

Runner for percolator builds under centos

combine-psm

Tomas' project on PSM rescoring

contranovo

Experimenting with ContraNovo representations on MS2 data

cryohmmer

decoy-decoy

Test of differences of decoy databases

dia_sum

Patrick's repository

diffacto

exactpermutation

An approximation of an exact permutation test of difference in means for two samples

featureimportance

gcamin

Linear models of amino acid content as function of GC contenent

genesetdp

Geneset enrichment analysis, using networks

gptime

Chromatographic Retention Time prediction with Gaussian Procsses

iprg2016_submission

Test script and a sample submission to the iPRG2016 competition

kd1280

Public repository with exercises in KD1280

lilliput

Loingitudinal pathway analysis with PCA

mad_decoy

Some decoy experiments to help Yasset

maracluster

Matthew The's implementation of MaRaCluster

maracluster_workshop

metabric-pathway-survival

Plots and

mipath

Source code for MIPath, a pathway analysis method.

ms2graph

Code for the ms2graph project