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Hi there πŸ‘‹

🌱 I work at the intersection of data science and health. Specifically, I develop scalable methods and open-source software for biomedical data analysis leading to an improved understanding of human health and disease. I work to made these spaces more welcoming, diverse, and inclusive.

πŸ‘©β€πŸ’» I am an Associate Professor of Biostatistics at Johns Hopkins, faculty member of the Johns Hopkins Data Science Lab, and affiliations with the Center for Computational Biology, the Department of Genetic Medicine, and the Department of Biochemistry and Molecular Biology.

🎧 I’m also a co-host of the The Corresponding Author podcast, member of the Editorial Board for Genome Biology, an Associate Editor for Reproducibility at the Journal of the American Statistical Association, and co-founder of R-Ladies Baltimore.

πŸ‘©β€πŸ« I have received several awards for my work, including the NIH K99/R00 Pathway to Independence Award, the Teaching in the Health Sciences Young Investigator Award, and the COPSS Leadership Academy from the American Statistical Association (ASA), arguably the statistical profession’s most prestigious award for early career leaders in Statistics and Data Science.

Stephanie Hicks's Projects

awesome-single-cell icon awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

benchmark-kmeans icon benchmark-kmeans

Repository to benchmark k-means using HDF5 files using (1) sci-kit learn in Python and (2) BiocSklearn in R/Bioconductor

biocverse icon biocverse

project to create an interactive data viz of the biocoductor ecosystem

bodymaprat icon bodymaprat

This package contains a SummarizedExperiment object from the Yu et al. (2014) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. PMID: 24510058

cshlcg2022 icon cshlcg2022

Course material from Stephanie Hicks for CSHL Computational Genomics 2022 course

cshlcg2023 icon cshlcg2023

Course material from Stephanie Hicks for CSHL Computational Genomics 2023

cshlgsd2022 icon cshlgsd2022

Course material from Stephanie Hicks for CSHL Genome Scale Data 2022

dmrseq icon dmrseq

R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

flowsorted.blood.wgbs.blueprint icon flowsorted.blood.wgbs.blueprint

A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT

hansen-hicks-professional-development icon hansen-hicks-professional-development

Repository presentations and links to resources for professional development from joint lab meeting between Kasper Hansen (https://www.hansenlab.org) and Stephanie Hicks (https://www.stephaniehicks.com)

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