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Stephen Floor's Projects

extract-transcript-regions icon extract-transcript-regions

For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and CDS).

free icon free

An analog of the *NIX free utility for OSX. Monitor memory usage.

pub-list-from-ncbi icon pub-list-from-ncbi

Fetch a publication list from the NCBI to populate a publications page on a website using javascript/jQuery.

transcriptome-properties icon transcriptome-properties

For bioinformatic analysis of RNA transcripts. Calculate various properties of an input transcriptome such as length, GC content, and number of exons per transcript or transcript region.

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