sterrettjd Goto Github PK

advent-of-code-2020

Julia Scripts for the 2020 Advent of Code challenges

aoc-2022

Advent of code 2022

artificial-immune-microbiome

An artificial immune system algorithm focused on dealing with microbiome data

bit

Bioinformatics Tools

breastfed-neonates

Analysis of microbiomes of breastfeed infants from Camden, New Jersey

cauda

Using knowledge to improve differential abundance testing

chemobrain

Analysis of gut microbiome of chemotherapy patients with cognitive dysfunction

correlationstats

csci-6118-project

An Interactive Educational Resource for the Analysis of Microbial Community Ecology

cu-sewer-metagenomics

Analysis of CU Boulder sewer system metagenome (from sampling effort for SARS-CoV2 detection) focused on temporal patterns

diff-abundance-tool

Simple microbiome differential abundance using STAN

effective-snakemake-hpc

Resource for effectively using Snakemake on high performance compute clusters, with applications to metagenomics

epss

etee-manuscript

Analysis and data for "Properties of the ETEE Beeswax Wrap: Compostability and Resistance to Temperature, Detergent, and Acid/Base Exposure"

glutenshield

Pre + pro-biotic trial

gt-micro-metabo

Microbiome-metabolome interactions in mice consuming green tea (IQ Bio rotation with Nichole Reisdorph)

h-pylori-microbiome-analysis

Microbiome analysis for "Characterization of gut microbiome and metabolome in Helicobacter pylori patients in an underprivileged community in the Unites States"

hiv-metag

hiv-microbiome

Gut microbiome of HIV+ individuals in rural Appalachia

homi

Host-microbiome dual transcriptome pipeline

homistats

Statistics for host-microbiome dual transcriptomics

iq2022rosalind

Teaching repository for IQ Bio 2022 Bootcamp

log-ratio-subcomp

microbiome-disco-sandbox

Sandbox for learning some git/github and microbiome data processing simultaneously

microshades

This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.

multi-omics-tools

Tools for multi-omics analyses

nicotine-microbiome

IQ Biology Rotation Project with Noah Fierer

phadtare-ibs

Irritable Bowel Syndrome microbiome/metabolome analysis in individuals from Camden, NJ

poly-omics-risk

q2-longitudinal

QIIME 2 plugin for paired sample comparisons