stevegoldstein Goto Github PK

2016-10-26-botany-problem-solving

2018-01-17_workshop

Git Workshop --- Software Carpentry Follow Up

bhm_covid_testing

Code for running model in BHM (2020) and UI to change parameters

boot-camps

UW-Madison Software Carpentry workshop material

bot960_traitstutorial

Project for Fall 2020 Bot 960

botanyproblemsolvingsessions

chtc-samples

Some sample files and scripts for CHTC

comparecovid19datasources

condorworkshop

Introduction to High Throughput Computing Workshop for UW Math Department

covid

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

covid-19-data

An ongoing repository of data on coronavirus cases and deaths in the U.S.

covid-19_casesandtests

covid19-severity-prediction

COVID19 data + modeling at the county-level + hospital-level.

covid19computwi_r0

Compute instantaneous R0 for Wisconsin counties

debruijnwavelet

Experiments with a wavelet-motivated representation of genomic DNA sequence data

enkf_analysis

EnKF analysis routines in Fortran 90. Stochastich and SQRT formulations with subspace inversion.

enkf_sampling

Sampling of 1D and 2D pseudo random curves and fields.

enkf_seir

EnKF_seir

etacorrespondence

MAGMA code for working with rank of representations for classical groups

firstmondays-bashenvars

firstmondays-makeandconfigure

firstmondays-modifyingprograms

Modifying a bash script to split multi-sequence FastA files into separate files, one for each sequence.

firstmondays-runbwa

git repo from the November 6, 2017 "First Mondays" presentation: ""A workflow for implementing HTCondor Pipelines"

gating

COVID-19 Gating Diagnostics in Wisconsin

gbs_preprocessing

Running cutadapt and process_radtags via HTCondor on the UW Madison Center for High Throughput Computing (CHTC) pool.

gostic-effective-r0

Estimating Covid-19 reproduction number with delays and right-truncation

gpdream

GP-DREAM: Best-performing network inference tools shared using GenePattern

group-testing

high-dim-data-lesson