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Simon Heumos's Projects

libbf icon libbf

:dart: Bloom filters for C++11

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multiqc icon multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

pangenome-paper icon pangenome-paper

Cluster efficient pangenome graph construction with nf-core/pangenome

qmsfc icon qmsfc

Data and code for the `Multiomics surface receptor profiling of the NCI-60 tumor cell panel uncovers novel theranostics for cancer immunotherapy` paper.

seqwish icon seqwish

alignment to variation graph inducer

sgd2 icon sgd2

header-only large graph layout via stochastic gradient descent

sibeliaz icon sibeliaz

A fast whole-genome aligner based on de Bruijn graphs

smoothxg icon smoothxg

linearize and simplify variation graphs using blocked partial order alignment

test-datasets icon test-datasets

Test data to be used for automated testing with the nf-core pipelines

wfmash icon wfmash

base-accurate DNA sequence alignments using WFA and mashmap2

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