Comments (2)
Good suggestion. I'm putting it on my todo list for the next release. Will keep you updated.
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Hi plijnzaad,
A new release of Arriba is available. The workflow is now simpler (and faster). extract_read-through_fusions
is obsolete and no read_through_fusions.bam
file is generated anymore. Therefore, there is no need to add a @PG
header anymore.
Regards,
Sebastian
from arriba.
Related Issues (20)
- request for simulation dataset mentioned in the paper HOT 2
- intergenic breakpoints reported without distances to genes HOT 1
- Can one read be used to support multiple fusions HOT 6
- Use draw_fusions.R to only output partial plots HOT 1
- Arriba for plate-based scRNA-seq HOT 2
- Recommendation for samtools bam>fastq conversion for Arriba HOT 1
- FastQ test data cannot be aligned HOT 2
- Recommended STAR index version HOT 10
- Missing Transcript IDs in ARRIBA Output Files HOT 11
- error: Command 'arriba' not found, did you mean: command 'ariba' from deb ariba (2.14.6+ds-3build1) HOT 1
- total=ERROR: could not find sequence of contig 'NC_007605' HOT 2
- Issue with the "relative_support" filter HOT 1
- The CBFB::MYH11D fusion gene is discarded by the 'blacklist' filter, but it is not found in the blacklist file. HOT 3
- Can I use the latest Gencode GTF file ? HOT 1
- coverage < split_reads HOT 1
- Feature request: Compatibility with Starlong HOT 3
- Arriba output filtering HOT 5
- Reference Genome HOT 2
- Using a genome not supported HOT 3
- zsh: exec format error: ./arriba HOT 5
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