Name: Sukrit Singh
Type: User
Company: @choderalab @foldingathome
Bio: Biophysicist | Damon Runyon QB and K99/R00 Fellow @mskcc – Chodera+Seeliger labs | Folding@home team | proteins, drug resistance, dynamical systems, info theory
Twitter: sukritsingh92
Location: NYC
Blog: sukritsingh.github.io
Sukrit Singh's Projects
Editable creature database for Dungeons and Dragons 5e
CARDS-Reader: Methods to analyze CARDS data
compchem class materials for Yuanqing Wang
(In development) Tweets when words are published for the first time in the congressional record
Adventures and experiments in visualizing covid19 case/death/vaccination data
Modeling molecular ensembles with scalable data structures and parallel computing
Input files for setup and running metadynamics simulations for ligand dissociation
A searchable and editable spell list for the d20 5e SRD
Generate a png map given a list of IP addresses (not included)
Collection of scripts / notebooks to reliably select datasets
Structure-informed machine learning for kinase modeling
OpenMM is a toolkit for molecular simulation using high performance GPU code.
Proof-of-concept for the OpenMM Cookbook
OpenMM plugin to interface with PLUMED
PDBFixer fixes problems in PDB files
Printing text using protein structures
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
Best Practices article intended for LiveCoMS
Estimator for nonequilibrium averages for symmetric protocols, in which forward and reverse processes are identical