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deltashape icon deltashape

SHAPE-MaP both measures RNA flexibility at single-nucleotide resolution and quantifies the uncertainties in these measurements. The deltaSHAPE framework incorporates these uncertainties to allow detection of RNA structural differences between any two states, including the general effect of the cellular environment, protein binding in cells, and pat

draw_rna icon draw_rna

Draw RNA secondary structures in python.

exrex icon exrex

Irregular methods on regular expressions

linearpartition icon linearpartition

Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities

rnavis icon rnavis

Misc. RNA visualization snippets

superfold icon superfold

SuperFold is a pipeline that uses output data from ShapeMapper to model RNA secondary structures, including pseudoknots; identify de novo regions with well-defined and stable structures; and visualize most probable and alternative helices.

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