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behavior-ontology

Neuro Behaviour Ontology: an ontology for human and animal behaviour processes and behaviour phenotypes

checkm

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

chromosomer

A reference-assisted assembly tool for producing draft chromosome sequences.

containers

Bioinformatics containers

deblur

Deblur is a greedy deconvolution algorithm based on known read error profiles.

demic-in-cwl

CWL implementation for DEMIC

docker-base

Base images for xenonpy project

drep

Rapid comparison and dereplication of genomes

eebiic

Effect Estimator By Incident Interval Count

envo

A community-driven ontology for the representation of environments

fastani

Fast Whole-Genome Similarity (ANI) Estimation

fastani-in-cwl

Wrapper tool of fastANI by CWL and Docker

functree-cli

Visualization and analysis tool for omics data based on biological functional tree

grid-in-cwl

Growth Rate Index Calculater wrapped by CWL

hmc_loss

Hierarchical Multi Class validation metrics:HMC-loss

honkit-testdocs

Test repository to reproduce Issue #295

irep

scripts for estimating bacteria replication rates based on population genome copy number variation

labeled-lda

The C implementation of Labeled-LDA with collapsed gibbs sampling estimation.

lea-app

llda

Scikit-learn like Labeled-LDA

mash

Fast genome and metagenome distance estimation using MinHash

msbar-in-cwl

onlinelda_particlefilter

Topic prediction of new documents with pre-learned LDA model by Particle filter posterior estimation.

ptrc-in-cwl

Peak-to-Trough-Rate Calculater wrapped by CWL

pycogent

PyCogent: Official repository for software and unit tests

pyomocontainer

Docker container for optimization with pyomo and some of MINLP solvers.

pystan

PyStan, the Python interface to Stan

pytorch_geometric

Geometric Deep Learning Extension Library for PyTorch

ragoo

Fast Reference-Guided Scaffolding of Genome Assembly Contigs

ragoo-in-cwl

Wrapper tool of RaGOO by CWL and Docker