Name: Sven F.
Type: User
Company: QBiC @qbicsoftware
Bio: Team leader IT infrastructure and software development at the Quantitative Biology Center, University of Tübingen.
Young apprentice of Clean Architecture.
Location: Tübingen, Germany
Blog: https://uni-tuebingen.de/en/research/research-infrastructure/quantitative-biology-center-qbic/
Sven F.'s Projects
Module Advanced Java Programming in Bioinformatics - Prof. Daniel Huson
Bioinformatic project - secondary structure annotation
Some exercises to learn how to do concurrent programming with Java.
Config files used to define parameters specific to compute environments at different Institutions.
Template for your own top-end Nextflow pipeline, customised using Cookiecutter
Exercises to Bloch's Effective Java Items
openbis etl scripts
An example project to display the Gitflow workflow.
Experimenting with Github pages and integrations
Precision HLA typing from next-generation sequencing data
WIP: A Nextflow pipeline to run featureCounts on RNAseq BAM files on ICGC in AWS/AWS Batch
Just another playgrouond repository
Exploration of Kotlin programming language
contains logos for nf-core
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
A DSL for data-driven computational pipelines
Files for the main nf-core website >>>
Documentation website for the nf-core community
A microservice consuming JSON objects emitted by Nextflows weblog feature and puts it into a DB.
Pipeline for analysing 10X single cell data
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
Practical bioinformatics course
NIH BYOB Presentation Materials
Playground for an REST server