Comments (2)
I have solved the issue by adding the necessary imports to the memtest.py
A pull request is waiting for you :)
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This has been fixed and will be released on pypi shortly. Thanks @konung-yaropolk for pointing it out and creating the PR!
For the record I intend to keep pyabf focused on reading ABF files, and users are highly encouraged to write their own analysis software. The pyabf.tools.memtest
module works but it's not optimized for efficiency or accuracy. I'll update the documentation website to make this more clear.
Users interested in learning more about membrane test calculations are encouraged to check-out Exploring the Membrane Test with a Voltage-Clamped Neuron Model (a blog post I wrote last year that does a deep dive into membrane test calculations)
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Related Issues (20)
- pyabf compatibility with pyInstaller HOT 4
- Support protocols with user list epoch durations HOT 10
- add type hints and improve documentation
- ABF() should accept a pathlib.Path
- Stop warning when invalid dates are detected
- refactor header reader into smaller files
- Fails to load files with more adc channels than dac channels HOT 3
- ABF.sampleRate
- FFT/Spectrogram analysis of ABF data HOT 10
- Memory usage builds up when iteratively open abf files HOT 6
- Tutorial code - Plot the Command Waveform HOT 1
- add return types to properties HOT 5
- investigate memory management in long-running applications HOT 2
- error: unpack requires a buffer of 1 bytes (end of file reached) HOT 5
- Folder loop with pyabf HOT 2
- parent/child grouping
- ValueError when printing the header HOT 3
- How to read the epoch that a user list is applied to?
- Acces to Telegraphed Gain HOT 4
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