Name: Sydney Informatics Hub
Type: Organization
Bio: The Sydney Informatics Hub is a Core Research Facility of the University of Sydney, providing training and expertise on research data, analysis and computing.
Twitter: Sydney_CRF
Location: University of Sydney, Sydney Australia
Blog: https://sydney.edu.au/sydney-informatics-hub
Sydney Informatics Hub's Projects
Machine learning in python workshop page
Workshop Website geospatial data
Australian BioCommons Leadership Share (ABLeS) documentation
Open source annotations tools for aerial imagery. Part of https://github.com/Sydney-Informatics-Hub/PIPE-3956-aerial-segmentation
Open source tools enabling interchange between computer vision annotation and GIS data formats. Part of https://github.com/Sydney-Informatics-Hub/PIPE-3956-aerial-segmentation
Open source aerial imagery segmentation model fine tuning, evaluation, and prediction tools. Part of https://github.com/Sydney-Informatics-Hub/PIPE-3956-aerial-segmentation
Machine learning tools for modelling and predicting agriculture systems and their uncertainties.
Public server repo instructions for AgReFed
Workshop documentation, workflows and use-case examples for AgReFed DataHarvester and GEE in Python and R.
Tools for aerial and satellite imagery acquisition, processing, annotation, and analysis using artificial intelligence
Testing various protein modelling tools
Demo workflow for fine tuning an object detection model on a custom dataset and deploying a prediction web app.
Code and resources to scrape articles and analyze proportion of women and men quoted in media.
Automated testing testing for SIH Nextflow workflows
Report summary statistics relating to quality of bam files with Nextflow
Generate a baubled word cloud!
Subset bioinformatics datasets for workflow development and testing
Resource library and utility scripts and templates for public bioinformatics work
Collect compute usage metrics from NCI Gadi BioCommons Canu Workflow
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Links and other details for licensed softwares at SIH
Bootstrap a variant resource for non-model organisms that lack known variant databases. This is to enable GATK Base Quality Score Recalibration (BQSR) to be performed for improved variant calls.
With Ben Mather
WIMR cBioPortal as customised by Sydney Informatics Hub. Move from https://bitbucket.org/ctds/cbioportal.git on 19th March 2019.