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arrow

Apache Arrow is a cross-language development platform for in-memory data. It specifies a standardized language-independent columnar memory format for flat and hierarchical data, organized for efficient analytic operations on modern hardware. It also provides computational libraries and zero-copy streaming messaging and interprocess communication. Languages currently supported include C, C++, Java, JavaScript, Python, and Ruby.

arrow-datafusion

Apache Arrow DataFusion and Ballista query engines

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

cglib-conv

cpplinks

A categorized list of C++ resources.

custom-images

Tools for creating Dataproc custom images

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

dotfiles

Repository to keep (dot files) settings in a linux system

fletcher

Fletcher: A framework to integrate FPGA accelerators with Apache Arrow

hatchet

HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.

lab1

Advanced Computing Systems Lab1 files

mark-duplicates

Mark PCR duplicates and sequencing platform / optical duplicates in single-end SAM files

matplotlib-python-graphs

A small effort to build a simple library to generate different types of graphs in Python.

matplotlib-tutorial

Matplotlib tutorial for beginner

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

mpi_rma

mpimarkdup

mpi and C based marking of duplicates for Next Generation Sequencing technology

parallel-merge-sort

Shared Memory, Message Passing, and Hybrid Merge Sort: UPC, OpenMP, MPI and Hybrid Implementations

planets

This is all about Planet

riscv-wiki

sarviewer

Generate graphs with gnuplot or matplotlib (Python) from sar data

softiwarp

SoftiWARP: Software iWARP kernel driver and user library for Linux

sparkga1

SparkGA is an Apache Spark based scalable implementation of the best practice DNA analysis pipeline by Broad Institute.

sparkga2

vector_addition_tutorials

This repository stores all of the OLCF vector addition tutorials