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arvin

A package that ranks the SNPs using genomic, epigenomic and network based features.

cellotype

codeximageprocessingpackage

cosbi

csi-ann

cytocommunity

The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains

cytotalk

A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.

fcop

gluer

im-pet

kmt2ar_paper

limacc

m-module

maple.1.0

An R package for predicting gene activity level for single cell DNA Methylation data

opticon

A general framework for systematic and de novo identification of synergistic key regulators.

pangea

pivot

Platform for Interactive analysis and Visualization Of Transcriptomics data

rgmap

scatac-pro

A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data

scatac-pro_paper

The data and scripts used for scATAC-pro manuscript

scrabble

Single Cell RNA-Seq imputAtion constrained By BuLk RNAsEq data (SCRABBLE)

scrabble_paper

sinbad

SINBAD

sinbad.0.1

Single Cell DNA Methylation Pipeline

spatial-bonemarrow-atlas

This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatial Organization of the Human Bone Marrow Microenvironment"

viscello

Viscello for Visualization of Single Cell Data