tanyalama Goto Github PK

2nd.paper

pipeline for second paper

conservation-genomics-course-dtu

Lecture and exercises for the module "Conservation Genomics" at DTU PhD course

contemporary_analysis

dgs_lg_labs

hpsmc

Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes

informatics-tools

Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files

landscapegenomics

Tutorials for bioinformatics and data analysis related to landscape genomics

littlebrownbats_wnssurvivorsvsnonsurvivors

Code and input files for Auteri and Knowles 2019 publication

manuscripts

ncbi_sequence_read_archive_submit

Basic instructions for submitting raw read data and associated metadata to NCBI sequence read archive.

ngs_pipeline

This repo contains scripts I use for processing reads and calling variants for next generation sequencing data set, specifically whole genome sequencing dataset.

ottergenomeproject

Scripts associated with the sea otter and giant otter genome project (Beichman et al. 2019)

project_bat_longevity

project_canada_lynx_wgs

project_grants

A public repo for my successful AND unsuccessful grant proposals

project_iberian_lynx_fluidigm

project_nsf_reu

project_red_squirrel_rad

rad_tools

A collection of usefull tools for RAD or GBS data analysis

selection_screen_tools

smsc_conservation_genomics

Course materials for SMSC course on Conservation Genomics

tanyalama.github.io

This is the repository I use to manage my simple academic website at https://tanyalama.github.io/

toga

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

variant-calling