Name: Tanya Lama
Type: User
Company: Assistant Professor of Genomics, Smith College
Bio: -omics forever <3 | Asst Professor of Genomics, Smith College
Twitter: tanyalama
Location: Northampton, MA
Blog: tanyalama.github.io
Tanya Lama's Projects
pipeline for second paper
Lecture and exercises for the module "Conservation Genomics" at DTU PhD course
Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
Tutorials for bioinformatics and data analysis related to landscape genomics
Code and input files for Auteri and Knowles 2019 publication
Basic instructions for submitting raw read data and associated metadata to NCBI sequence read archive.
This repo contains scripts I use for processing reads and calling variants for next generation sequencing data set, specifically whole genome sequencing dataset.
Scripts associated with the sea otter and giant otter genome project (Beichman et al. 2019)
A public repo for my successful AND unsuccessful grant proposals
A collection of usefull tools for RAD or GBS data analysis
Course materials for SMSC course on Conservation Genomics
This is the repository I use to manage my simple academic website at https://tanyalama.github.io/
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.