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affiliation_parser

Simple python parser for MEDLINE, Pubmed OA affiliation string

affilparser

Conditional Random Field (CRF) Parser for Affiliation String in MEDLINE and Pubmed OA

bringing-old-photos-back-to-life

Bringing Old Photo Back to Life (CVPR 2020 oral)

c2s

A toolbox for inferring spikes from calcium traces.

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

caiman-matlab

Complete Matlab pipeline for large scale calcium imaging data analysis

caltrack

constrained-foopsi

Implementation of the constrained deconvolution spike inference algorithm in Matlab

constrained_foopsi_python

Python implementation of the constrained deconvolution algorithm

datasciencecoursera

datasharing

The Leek group guide to data sharing

dedrm_tools

DeDRM tools for ebooks

dipaksdata

dotdetector

fast-oopsi

a repository containing everything relevant to our fast non-negative deconvolution work

fiji-lib

ilastik

ilastik-shell, applets, and workflows to string them together.

jimaging2020

kilosort

GPU code for spike sorting

npy-matlab

Experimental code to read/write NumPy .NPY files in MATLAB

oasis

Deconvolution of calcium imaging data

oasis_matlab

opensafely-risk-factors-research

This is the code and configuration for our paper, OpenSAFELY: factors associated with COVID-19-related hospital death in the linked electronic health records of 17 million adult NHS patients

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

pubmed_parser

:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

slidej

SlideJ: an ImageJ plugin for WSI processing

test-repo

tseriescorrelator

Finds statistical correlation between multiple time series

vca

Vertex Component Analysis in Python

vmcacausality

Detector of causality between two signals, Vm and Ca.