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An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.
accessory functions for processing microbial community data
A versatile pairwise aligner for genomic and spliced nucleotide sequences
A small tool to do the statistics legwork on benchmarks etc.
Scan contig files against PubMLST typing schemes
Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
Aggregate results from bioinformatics analyses across many samples into a single report.
MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome
Antibiotic resistance predictions in minutes on a laptop
Software for nanopore data analysis
Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria
Northern Arizona SNP Pipeline
Tools for detecting mutations of interest in SARS-CoV-2 sequencing results
A DSL for data-driven computational pipelines
A collection of examples introducing to Nextflow scripting
Pipeline to generate complete public health microbiology reports from Illumnina sequenced isolates
Useful bash one-liners for bioinformatics.
Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
Processing pipeline for pan-genome visulization and exploration
Pan-genomic sequence analysis
🌈 Interactive analysis of metagenomics data
Identify phage regions in bacterial genomes for masking purposes
Phigaro is a scalable command-line tool for predictions phages and prophages from nucleid acid sequences (including metagenomes) and is based on phage genes HMMs and a smoothing window algorithm.
Interactive in-browser track viewer
Pilon is an automated genome assembly improvement and variant detection tool
BASH scripted pipelines for accurate de novo assembly, variant calling, and validation in and for parasite genomes
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.