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Tim Booth's Projects

bioinvindex icon bioinvindex

The web application, model, database persistence, services package and web services for the BII. Led by Tim Booth (NERC), Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford) and Marco Brandizi (EMBL-EBI))

configargparse icon configargparse

A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.

cutadapt icon cutadapt

cutadapt removes adapter sequences from sequencing reads

hamming-it-up icon hamming-it-up

An algorithm for calculating string hamming distance faster

mothur icon mothur

Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.

mpitutorial icon mpitutorial

MPI programming lessons in C and executable code examples

odfdo icon odfdo

python library for OpenDocument format (ODF)

oswitch icon oswitch

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

pod5_by_pore icon pod5_by_pore

Snakemake workflow to re-batch POD5 files by pore/channel

repo2rocrate icon repo2rocrate

Generate a Workflow RO-Crate from a best-practice workflow repository

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