tdanford/datacleaning
Simple scripts for data munging and cleaning.
Repositories
tdanford/screen
tdanford/dotfiles
Colourful & robust OS X configuration files and utilities.
tdanford/battleship
Board games for my daughter
tdanford/code-scanner
Experiments with using tree-sitter in Python to quickly parse source code in other languages.
tdanford/tinymap
tdanford/pyplans
tdanford/musee
Dynamic web app 'presentations', driven by user scrolling, inspired by the NYT
tdanford/pybard
tdanford/ideals
Experimentation with computer algebra in Java
tdanford/vcfc
An experimental VCF flattener in C
tdanford/awa-scraper
tdanford/vcf_loader
Prototype loader for the Variant Call Format files
tdanford/rasch-model
Implementation of a Rasch Model
tdanford/ala-coding-class
tdanford/treasure-hunt
Utilities for creating coded treasure hunts for my kids
tdanford/java-json-schema
Java implementation of a JSON Schema loader and validator
tdanford/djeocoder
A standalone geocoder, derived from the OpenBlock use of GeoDjango.
tdanford/java-obo
Java library for parsing and handling OBO ontologies.
tdanford/datamining-36-350-homework
Source Code for Fall 2009 36-350 Homework
tdanford/bdg-formats
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
tdanford/bioinfo-algorithms
Experimentation
tdanford/ContEst
Spark implementation of the ContEST contamination estimation algorithm.
tdanford/scheduling-simulator
Simulator for writing and evaluating cloud schedulers
tdanford/metamodel_extras
Extra pluggable modules for Apache MetaModel (but licensed with LGPL)
tdanford/adam
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
tdanford/bdg-utils
General (non-omics) code used across BDG products. Apache 2 licensed.
tdanford/dropwizard-configurable-assets-bundle
An implementation of an AssetBundle for use in Dropwizard that allows user configuration.
tdanford/bigwig4j
A BigWig Reader, in Java
tdanford/ga4gh-flask-api
Flask implementation of part of the GA4GH WS API