Comments (1)
@pakiessling, thank you for using CellTypist!
You have to collect annotation for each dataset, and CellTypist will try to harmonise/align their annotations. After harmonisation, the alignment.reannotation
will contain harmonised cell types in the reannotation
and group
columns, which can be used for reference. In short, each dataset needs to have annotation (if you do not have such information, you can perform clustering for the dataset with missing annotation, and use its clustering numbers as an alternative).
Also please use the latest version of CellTypist (1.5.1).
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Related Issues (20)
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