Comments (3)
Hi @mxiang1, thank you for using CellTypists.
Can you check if you can access the URL from a web broswer in the same network?
Paste this in your browser: https://celltypist.cog.sanger.ac.uk/models/models.json
does it load properly?
From the same environment you can try to retrieve the model list using wget or curl.
wget -O models.json https://celltypist.cog.sanger.ac.uk/models/models.json
Does that work?
If some of those still don't work, then it may be an issue with the web proxy on your network that's blocking the URL.
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Hi Prete,
I tested the wget command and also failed to connect.
$ wget -O models.json https://celltypist.cog.sanger.ac.uk/models/models.json
--2023-11-17 08:59:00-- https://celltypist.cog.sanger.ac.uk/models/models.json
Resolving celltypist.cog.sanger.ac.uk (celltypist.cog.sanger.ac.uk)... 193.62.203.62, 193.62.203.63, 193.62.203.61
Connecting to celltypist.cog.sanger.ac.uk (celltypist.cog.sanger.ac.uk)|193.62.203.62|:443... connected.
Unable to establish SSL connection.
I'm connecting from our institutional HPC and the support team told me there seems to be a restriction put in place on the Sanger side which doesn't accept connections from Stanford systems.
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The same is happening here.
Any attempt to download a model using the python API in our HPC fails due to connection timeout.
However, manual download from the browser in my personal laptop seems to work fine.
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Related Issues (20)
- codes for harmonizing the cell labels HOT 2
- the question about conf_score HOT 3
- CellTypist_Immune_Reference_v2 question HOT 2
- Immune_All_Low - model training question HOT 4
- Cluster-level label prediction HOT 1
- Running celltypist with concatenated dataset HOT 3
- Running the CellTypist training function celltypist.train on a subset of genes HOT 1
- ValueError in celltypist.annotate HOT 3
- is it available to generate model.pkl file from a marker gene list HOT 1
- Feature: Support Rapids-singlecell HOT 1
- Can not detect a neighborhood graph, will construct one before the over-clustering HOT 1
- multiple models HOT 3
- Question about over_clustering and conf_score? HOT 1
- Conflict with variable genes and model training HOT 1
- www.celltypist.org is down, cannot download models HOT 3
- Can not download the model HOT 2
- Very low confidence score even though labels are correct HOT 2
- celltypist before/after batch correction HOT 6
- Issue accessing www.celltypist.org - 502 Bad Gateway HOT 5
- Organ atlas Citing CellTypist. Automatic cell type harmonization and integr… HOT 1
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