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πŸ‘¨β€πŸ’» About Me

Hi! πŸ‘‹

My name is Tim (he/him).

I'm a cloud-native computational biologist and maker with a passion for problem solving. My mission is to elevate biological intuition and knowledge with a mastery of informatics and systems engineering. As a dynamic technical leader, I'm known for deciphering esoteric technical challenges; flourishing in environments where I can architect systems, craft tools, streamline processes, and mentor and advocate for others to empower an exceptional team around me.

I'm motivated and fascinated by extracting, compiling, and presenting visual meaning from complex information. Scientifically, I'm most comfortable solving mysteries large and small in the world of nucleic acid biology: sequence processing, novel assay development, and algorithmic implementation. Documentation and reproducibility are not just checkboxes; they are the backbone of my analytical work. I find my sweet spot in engineering cloud resources, informatic tools, and robust automated systems to fuel massively parallel computational biology and machine learning.

πŸ“ My GitHub

I host a lot of random repos on GitHub - primarily a combination of bioinformatics, genAI experimentation, personal hardware projects, and home-automation related code and documentation.

Code hosted here is mostly either very old legacy and/or experiments done in spare moments here or there and doesn't represent my current style nor reproducibility/documentation practices when working on production code. The vast bulk of code I write for work is proprietary - for up-to-date code samples please contact me directly.

If you have questions or requests on any repos, please feel free to add an issue and I'll do my best to address it.

GitHub Stats

πŸ’¬ Ask me about:

  • 🧬 Bioinformatics, especially Next-Generation Sequencing (NGS) informatics
  • ☁️ Cloud solutions architecture (AWS)
  • πŸ”Œ Hobbyist microelectronics and smarthome devices
  • πŸ”¬ Gene Therapies, Cancer Immunotherapy (CAR-T), RNA Editing, Synthetic Biology, etc
  • πŸ€– GenAI
  • 🌐 Home networking

πŸ“« How to reach me:

Create an issue here, message me on LinkedIn , or visit my (very out of date) website at www.timothyjohnstone.com

πŸ‘₯ Socials

LinkedIn

πŸ’» Stack/Tech:

Code: Python R Shell Script | Visual Studio Code RStudio

Dev: GitHub GitHub Actions Anaconda SonarLint Nginx Git Docker

Cloud: AWS

Hardware: Raspberry Pi Arduino

Home: Pi-Hole Home Assistant Ubiquiti YouTube Music

OS/Browser: Ubuntu Windows macOS Android Firefox

Timothy Johnstone's Projects

r-plotting icon r-plotting

functions, guides, and scripts for various visualizations in R

restaurant-weekr icon restaurant-weekr

Hobby project to create website(s) that provide much-improved restaurant week listings (since city websites inevitably suck), powered by the Yelp API

rr_proj2_harmfulweatherevents icon rr_proj2_harmfulweatherevents

Second project for 'Reproducible Research' as part of the JHU Data Science specialization. Project involves exploratory analysis of harmful weather events, knitted together with literate programming into a final report.

solarsteinn icon solarsteinn

SΓ³larsteinn is a framework for running a Valheim dedicated server on pre-emptible public cloud instances (AWS Spot). Development paused.

soundcase icon soundcase

Schematics, parts lists, and instructions for creating your own portable and stylish bluetooth boombox suitcase

twittercontestbot icon twittercontestbot

Heavily-modified fork of the TwitterFollowBot library for a twitter bot, with the intent of supporting bots that automatically enter and win contests (contest bot files not included for competition's sake :P )

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