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levinhein avatar levinhein commented on June 4, 2024

I don't know if this might help or if it affected this "pred, delta" part. But during the Prediction part, there was a FutureWarning prompt.

SCRIPT:
NR_CD4T = train[((train.obs["celltype"] == "Exhausted CD4 T Cells") & (train.obs["response"] == "NR"))]
PROMPT:

/home/levinbioinformatics/anaconda3/envs/scgen_test/lib/python3.7/site-packages/anndata/_core/anndata.py:1094: FutureWarning: is_categorical is deprecated and will be removed in a future version.  Use is_categorical_dtype instead
  if not is_categorical(df_full[k]):

SCREENSHOT:
image

from scgen.

levinhein avatar levinhein commented on June 4, 2024

Hello. May I ask if you have any idea about this? Thank you!

from scgen.

M0hammadL avatar M0hammadL commented on June 4, 2024

Hi

We have released a new PyTorch version of the code. Please use this version.

Best
Mo

from scgen.

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