themantho / multilayer-brains

A pipeline for the construction and multilayer motif analysis of temporal fMRI brain networks

multilayer-brains

A pipeline for the construction and multilayer motif analysis of temporal fMRI brain networks. Consists of multiple modular parts, each of which can be applied separately - no need to restrict yourself to brain data only.

Network construction

Tools for creating multilayer networks from four-dimensional data arrays. Ready-made implementation for reading data arrays from fMRI files in the NIfTI data format, but naturally any data arrays can be used.

Motif analysis

Tools for identifying distributions of isomorphic subgraphs and motifs from any kind of multilayer network. Uses the pymnet library as the multilayer network back-end.