thomas-keller Goto Github PK

2016-02-22-isu

atacseq-snakemake

My first go at a snakemake pipeline. The biological question is looking at host-response in humans infected with Toxoplasma, so there is a somewhat unusual fastq decontamination step if you aren't used to metagenomics (this isn't metagenomics).

cloud-genomics

Lesson on Cloud/HPC for genomics lessons

cv

CV - Curriculum Vitae of Jelmer Tiete

docker-stuff

some docker files I've made

estro37

ESTRO twitter repo and analysis

exosome_markers_per_med_sep_2015

Exosome Markers Poster for Personalized Medicine Conference

insta-grab

try to mine instagram if they let me

intro_python_rc

Intro to Python materials for Research Computing

ml_twitter

Classifying twitter texts based on network statistics and other ~stuff~

myfirst_repo

toy example repo for ironhack/genomics 02/13/19

nips2016-tweets

R markdown (with interactive shiny apps) twitter analysis of NIPS2016 neural network conference

plant-seedling

Location for our group collaborative competition for the Kaggle, https://www.kaggle.com/c/plant-seedlings-classification

plos_corpus

parsing the plos corpus dump of fall 2016 (Python + R)

ranalysisworkshop2018

Code, slides and information for the 2018 USF Data Analysis Using R Workshop

rna-seq-snakemake

Snakemake based pipeline for RNA-Seq analysis

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

rtweet

R client for accessing Twitter [stream and REST] API

sentimenticon

Word-based sentiment analyzer

slurm_caret_tutor

snakemake-stardeseq2

steamspyr

Pull Down and Parse Steam Spy API Data

tampausers

a repository for slides, code, and other materials for the Tampa R Users Group

tensorflow-nb-scripts

I'm in the early days of learning both tensorflow AND machine-learning, so look away unless you want to see horrible notebooks and code

textnets

R package to perform automated text analysis using network techniques

thomas-keller.github.io

yet another website v9000

tibble

A modern re-imagining of the data frame

topic1_teama

Developing automated pipelines for conducting meta-analyses and systematic reviews

tweet-conf

Some simple R scripts to collect and visualize twitter happenings around a conference hashtag

tweet-pol

beginnings of twitter mining. Lots of code heavily based on https://github.com/SMAPPNYU/echo_chambers