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assignment-tool

Assignment tool for grading task sheets

biographvisart

Web-based visualization of graphml files using cytoscape.js

contrib_boost_1.60.0

BALL contrib repository for Boost 1.60.0

deregnet_pipeline

A Pipeline to work with DeRegNet and SBML4j to create reproducible maximally deregulated subnetworks

github-pages-with-maven-example

How to create a simple github page for your project using maven

keggtranslator

A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.

kpwd

The KEGG PathWay Downloader allows to download the KEGG pathway maps from the KEGG.jp REST API

pecax

pecax-docker

pysbml4j

python client library for interaction with sbml4j REST API

pysbml4j_script_runner

This project allows the building of a docker container, that upon running executes the python script named script.py in the scripts folder. It is intended for running scripts using pysbml4j against a SBML4j server in an environment where docker is available, but python is not.

r_and_m_graphql_backend

Demo project for implementing a GraphQL API server with Python

s4iwp

The SBML4j Initializer With Python

sbml4j

Load SBML Files and persist them in Neo4j

sbml4j-compose

manage and run sbml4j using docker-compose

sbml4jclient

Simple Client Scripts to load files into sbml4j

unipax

UniPAX is a data model for biological pathway based data

unipax_contrib

Third-party libraries used by the UniPAX Software