Comments (2)
Hi @Edison19991109 ,
filter.R is for post-processing somatic mutations for a batch of sampels. You could use it for filtering the results of somatic.pl.
The detailed instruction of filter.R can be found in READ.md. I also put the instruction here for your convenience.
Thanks!
Tianshi
from qbrc-somatic-pipeline.
Hi @tianshilu ,
Thank you for your help and reply! We have just mistaken flter_vcf.R as equal as filter.R.
Best wishes,
Jianning
from qbrc-somatic-pipeline.
Related Issues (14)
- picar.jar missing HOT 2
- Running somatic.pl through sbatch is very slow HOT 1
- Does it work with 10x scRNA-seq BAM ? HOT 6
- disambiguate_pipeline/conda_env/ HOT 1
- disambiguate_pipeline/conda_env/
- Unable to access picard.jar HOT 1
- Problem with GATK3 HOT 1
- Problems with job_somatic.pl HOT 5
- About LocatIt_ HOT 1
- Issue on filter_vcf.R HOT 2
- Potential bug in somatic.pl HOT 6
- What is the meaning to the normal/tumor files for the input in somatic.pl HOT 10
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from qbrc-somatic-pipeline.