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4gene_1tree

An experiment to determine if it is possible to recover a species tree with 128 taxa, with N loci only having 4 taxa present.

alntk

A toolkit for various summarizations of multiple sequence alignments

berteome

A library to analyze and explore protein sequences using BERT models

berthapin

Using BERT protein models to classify Beta hairpin peptides

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics_tutorials

A series of tutorials in bioinformatics

bugscraper

script for scraping images from bugguide

classify_peptides

cluck

course-nlp

A Code-First Introduction to NLP course

csv2tsne

takes csv to produce tsne plot

data-science-at-the-command-line

Data Science at the Command Line

data_art

Using data to make art

dots

A series of experiments to draw / render shapes using dots with p5

duomolog

An approach to identify the best set of homologous sequences from two homology searching approaches

evolveasketch

fusion-report

Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/

fustr

gene_art

A set of experiments to generate art visuals from genes

generativert

Scripts for making generative art using Javascript and the P5 library

golang_bioinformatics

A study in bioinformatics tools for evolutionary biologists with golang.

killer_knots

Source code for molecular evolution of inhibitor cystine knot toxins in wandering spiders

metafrek

A tool to efficiently calculate 3mer or 4mer frequencies in large metagenomic datasets.

microbium-app

Draw new worlds

mitochondrial_clifford_attractor

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

molecularevolutiontutorial

Tutorial for

oyp

Oyster River Protocol workflow and scripts

personal_website

phylode

Comparing expression levels between species