timothy-barry Goto Github PK
Name: Tim
Type: User
Location: Boston, MA
Name: Tim
Type: User
Location: Boston, MA
Permutation testing with powerful statistics
Code used to generate the data and figures in the manuscript "Collections in R: Review and Proposal."
2nd IGVF CRISPR-JAMBOREE
A data package storing some example scCRISPR screen data.
A GLM-based variant of the errors-in-variables model.
Code for reproducing analyses reported in "Exponential family measurement error models for single-cell CRISPR screens" (2022).
A Nextflow-based pipeline for GLM-EIV.
Scripts for the glmeiv manuscript
Download and process the Gasperini 2019 data
Code to import Xie 2019 data.
A demo Nextflow script using a simple Docker image.
Example Nextflow pipeline using ondisc.
Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.
Example data for the ondisc examples and vignettes.
Items related to my proposal
Read flat files (csv, tsv, fwf) into R
This is the repository for the sceptre Nextflow pipeline. The pipeline combines sceptre, ondisc, and Nextflow to enable massively scalable and statistically sound single-cell CRISPR screen analysis.
The sceptre Nextflow pipeline.
The second version of the sceptre Nextflow pipeline.
The sceptre2 package.
Example datasets for use in the `sceptre` vignettes
Portable and scalable simulation studies
Development scripts for `simulatr`.
The simulatr Nextflow pipeline
My website
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.