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applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

bioconda-recipes

Conda recipes for the bioconda channel.

chm1_scripts

cigar

simple library for dealing with SAM cigar strings

cutefc

Regenotyping structural variants through an accurate and efficient force-calling method

cutesv

Long read based human genomic structural variation detection with cuteSV

desalt

deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads

efarticles

EyreFree's articles.

memusg

A 'time'-like utility for Unix that measures peak memory usage

posters

A poster exhibited in 5th HIT CS PhD Forum.

rcanid

read Clustering and Assembliy-based Novel insertion Detection tool

readme

README文件语法解读，即Github Flavored Markdown语法介绍

rmetl

rMETL - realignment-based Mobile Element insertion detection Tool for Long read

rmfilter

Acceleration of long read-based structure variation calling by chimeric read filtering

sniffles

Structural variation caller using third generation sequencing

sv-benchmark

Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data

the-commands-of-the-evaluation

This is the command of Long-read sequencing settings for efficient structural variation detection based on the comprehensive evaluation. People can read/follow the commands clearly and conveniently.

thesis

博士论文（PhD Thesis）

visor

VarIant SimulatOR for short, long and linked reads

wtdbg2

A fuzzy Bruijn graph approach to long noisy reads assembly