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ain_pc_model

Python project that implements a dynamical systems model to simulate bistable perception.

attention_size

Repo for the attention size experiment

braincoder

Encoding models for fMRI implemented in tensorflow

brainimaging_vu

Repository for the brainimaging course for AI and psychology master's students at the Vrije Universiteit Amsterdam

ci_for_science

Continuous Integration and Continuous developement for scientific applications

cili

cili - bring your eye tracking data into focus

dcm2bids

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

decode_encode

eyetracking_course

This repo contains the materials for a two-day eye-tracking course at the graduate level.

firdeconvolution

Python class that performs finite impulse response fitting on time series data.

fmri-caveats

Learning fMRI by Caveats

fmriprep

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

gitignore

A collection of useful .gitignore templates

hcp_connective_fields

Repo containing code to reproduce figures for HCP CF article.

hcppipelines

hedfpy

convert SR Research eyelink edf output to tabular hdf5 format

hrf_mapper

hrs mapping experiment using exptools2

lyon_meg_prf

pRF mapping repository

md_article_template

To write your own paper, fork this repository and start writing!

neurodocker

Generate custom Docker and Singularity images, and minimize existing containers.

nmcp_ai_2020

Course GitHub repo for Neural Models of Cognitive Processes for AI students, 2020 edition

nsd_access

python package to access the data of the NSD (natural scenes dataset) fMRI project

open_demo

demo for open science workshop

pearl_3t

prf_fitting_workshop

Notebook repo for a little population receptive field workshop using Popeye

prf_lyon

prf analysis for prf Lyon project

pycortex

Pycortex is a python-based toolkit for surface visualization of fMRI data

pymc3

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano

pymp2rage

Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data

python_workshop-basel

The repository for the April 18-19 python workshop in Basel