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bioconda-recipes

Conda recipes for the bioconda channel.

clueminer

interactive clustering platform

clustering-benchmark

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

diamond

Accelerated BLAST compatible local sequence aligner.

folder-structure-conventions

Folder / directory structure options and naming conventions for software projects

gitignore

A collection of useful .gitignore templates

liftoff

An accurate GFF3/GTF lift over pipeline

miniprot-boundary-scorer

Miniprot boundary scorer parses introns, starts, stops and exons from miniprot's alignment output and scores them based on local alignment quality

miniprothint

Miniprothint selects a set of reliable gene prediction hints from miniprot alignments scored by miniprot boundary scorer.

nemo

File browser for Cinnamon

nemo-extensions

orthodb-clades

Generation of OrthoDB protein sets for gene prediction experiments

pollen-predictions

Final Project for Georgia Tech's Biostatistics class focusing on Atlanta's pollen levels predictions

prothint

Protein hint generation pipeline for gene finding in eukaryotic genomes

pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

wdl

Workflow Description Language - Specification and Implementations