transipedia Goto Github PK
Name: ANR Transipedia
Type: Organization
Bio: ANR Transipedia
Name: ANR Transipedia
Type: Organization
Bio: ANR Transipedia
Generalized contig annotation (dekupl-annot 2.0 in python)
Count few Tags fast and in large number of fastq file
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
Annotate DE contigs identified by DE-kupl.
Compute Normalization Factors from k-mer counts table.
Join multiple k-mer abundance files into a single matrix.
Replicability of dekupl and gene-level predictions across 2 independent lung cancer cohorts
DE k-mers assembly procedure.
Identify differentially expressed k-mers between RNA-Seq datasets
A set of test cases for dekupl-run, to make sure it really identifies differential k-mers
Differential analysis of k-mer abundances.
Shiny app to interactively visualize DE-kupl Annotation output
companon tools for Transipedia website and Reindeer.
A simple Python script for scanning a kmer count matrix and select lines with desired statistics
Prototype for decomposition of transcript or gene sequences and extraction of their specific k-mers
KmerExploR provides information of a requested RNA-seq dataset Set.
Sample reads from fastq files - align to genome - makes a "meta-bam" file.
Scripts and data for the CCLE Transipedia publication
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.