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apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

bioconda-recipes

Conda recipes for the bioconda channel.

blabel

:label: Python label/sticker PDF generation. HTML templates, built-in barcodes, qr codes, and other goodies

chado-export

A Python application for exporting organism sequences from a CHADO database to GFF file.

companion

Pipeline for automatic eukaryotic parasite annotation

crawl2

A spiritual successor to Crawl

deployment

docs

ensembl

The Ensembl Core Perl API and SQL schema

ensembl-metadata

API for storing and querying metadata from Ensembl and EnsemblGenomes

gffmunger

Munges GFF3 files exported from Chado (http://www.gmod.org/) database to make them suitable for loading into WebApollo.

gps-project-website

gps_dataviewer

GPS Dataviewer Webapp

parasite-static

Keeping static contents for ParaSite website

pathogen-informatics-training

python-apollo

Python library for talking to Apollo API

sanger-pathogen-singularity

Experimentation with the building of singularity repository for sanger-pathogene

singularity-bsub

Provides wrapper scripts for executing LSF commands within a Singularity container

snp-sites

Finds SNP sites from a multi-FASTA alignment file

update_pipeline

Update a pipelines metadata

vectorbase-gene_model_diff-environment

Environment for running the VectorBase Geneset merge script for Apollo annotations (gene_model_diff)

wbps-expression

Transcriptomic data for WormBase ParaSite

wormbase-pipeline

Sanger Wormbase Build Pipeline

xml-dom-xpath

Quick & dirty fix for CPAN XML::DOM::XPath install