Just upgraded to version 0.7, and found the summary option is broken. <p dir="auto

Did you run abricate *.fna > summary.tsv ? <p

This was the output with the database: <div class="snippet-clipboard-content notra

And summary output with v0.6: <div class="snippet-clipboard-content notranslate po

<a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/us

[bug] Summary option broken in version 0.7,about tseemann/abricate

Comments (11)

tseemann commented on June 12, 2024 1

Did you run abricate *.fna > summary.tsv ?

If do, I didn't realise that. Hmm, i understand the problem now!

You can resolve the problem for now by doing this:

for FA in *.fna ; do ID=$(basename $FA .fa); do abricate -q $FA > $ID.tab ; done
abricate --summary *.tab > summary.tsv

I will think about what do to in the case you provide.
You are correct in that it does the wrong thing.

PS. This is why my verson is < 1.0 as things can still change until release 1.0

from abricate.

dutchscientist commented on June 12, 2024

This was the output with the database:

#FILE	SEQUENCE	START	END	GENE	COVERAGE	COVERAGE_MAP	GAPS	%COVERAGE	%IDENTITY	DATABASE	ACCESSION
HS16119_S1_contigs.fna	NODE_16_length_94206_cov_22.0148	71152	71413	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
HS16119_S1_contigs.fna	NODE_16_length_94206_cov_22.0148	86498	87140	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
HS16119_S1_contigs.fna	NODE_39_length_3092_cov_648.498	1831	1959	ColRNAI_1	1-128/130	========/======	1/1	98.46	83.72	plasmidfinder	DQ298019
HS197_S4_contigs.fna	NODE_20_length_29641_cov_40.1911	13778	14354	IncFII(pCTU2)_1_pCTU2	1-577/577	===============	0/0	100.00	97.05	plasmidfinder	FN543095
HS197_S4_contigs.fna	NODE_26_length_4223_cov_353.347	3920	4050	ColRNAI_1	1-130/130	========/======	1/1	100.00	82.44	plasmidfinder	DQ298019
HS197_S4_contigs.fna	NODE_27_length_2391_cov_181.023	1360	1490	ColRNAI_1	1-130/130	========/======	1/1	100.00	86.26	plasmidfinder	DQ298019
HS36_S7_contigs.fna	NODE_21_length_9600_cov_144.492	1279	1728	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
HS36_S7_contigs.fna	NODE_24_length_4780_cov_90.6135	19	149	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
HS36_S7_contigs.fna	NODE_26_length_4024_cov_77.4686	2397	2550	Col156_1	1-154/154	===============	0/0	100.00	96.10	plasmidfinder	NC_009781
HS36_S7_contigs.fna	NODE_27_length_3399_cov_146.718	19	149	ColRNAI_1	1-130/130	========/======	1/1	100.00	88.55	plasmidfinder	DQ298019
HS36_S7_contigs.fna	NODE_28_length_2391_cov_76.3233	2031	2161	ColRNAI_1	1-130/130	========/======	1/1	100.00	86.26	plasmidfinder	DQ298019
HS36_S7_contigs.fna	NODE_36_length_410_cov_240.042	1	109	ColRNAI_1	1-109/130	=============..	0/0	83.85	90.83	plasmidfinder	DQ298019
HS3777_S10_contigs.fna	NODE_20_length_57476_cov_36.0348	8586	9228	IncFIB(S)_1	1-643/643	===============	0/0	100.00	98.91	plasmidfinder	FN432031
HS3777_S10_contigs.fna	NODE_20_length_57476_cov_36.0348	53211	53472	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
HS51537_S13_contigs.fna	NODE_16_length_94148_cov_24.8255	1928	2189	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
HS51537_S13_contigs.fna	NODE_16_length_94148_cov_24.8255	80223	80865	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
HS51537_S13_contigs.fna	NODE_50_length_4181_cov_287.272	3243	3373	ColRNAI_1	1-130/130	========/======	1/1	100.00	85.50	plasmidfinder	DQ298019
HS51628_S19_contigs.fna	NODE_15_length_106365_cov_18.746	28520	29394	IncFIB(pHCM2)_1_pHCM2	1-875/875	===============	0/0	100.00	98.40	plasmidfinder	AL513384
HS51628_S19_contigs.fna	NODE_17_length_97783_cov_15.124	68582	68998	IncA/C2_1	1-417/417	===============	0/0	100.00	100.00	plasmidfinder	JN157804
HS51628_S19_contigs.fna	NODE_40_length_4801_cov_118.639	1039	1169	ColRNAI_1	1-130/130	========/======	1/1	100.00	83.97	plasmidfinder	DQ298019
HS5256_S22_contigs.fna	NODE_19_length_48862_cov_22.0205	43211	43707	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
HS5256_S22_contigs.fna	NODE_19_length_48862_cov_22.0205	43449	43707	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
HS5256_S22_contigs.fna	NODE_28_length_16796_cov_17.972	2044	2725	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
HS5294_S2_contigs.fna	NODE_25_length_9600_cov_702.563	5980	6429	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
HS5294_S2_contigs.fna	NODE_31_length_2088_cov_612.208	110	240	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
HS5604_S8_contigs.fna	NODE_17_length_93970_cov_24.9484	1909	2170	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
HS5604_S8_contigs.fna	NODE_17_length_93970_cov_24.9484	80025	80667	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
HS61616_S11_contigs.fna	NODE_18_length_83962_cov_18.627	15134	15275	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	99.30	plasmidfinder	AP005147
HS61639_S17_contigs.fna	NODE_20_length_84808_cov_23.8642	15132	15273	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	100.00	plasmidfinder	AP005147
HS61648_S23_contigs.fna	NODE_31_length_35807_cov_20.4397	16325	16466	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	99.30	plasmidfinder	AP005147
HS61650_S3_contigs.fna	NODE_27_length_40155_cov_16.1076	34504	35000	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
HS61650_S3_contigs.fna	NODE_27_length_40155_cov_16.1076	34742	35000	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
HS61650_S3_contigs.fna	NODE_40_length_10452_cov_14.7102	7728	8409	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
HS61650_S3_contigs.fna	NODE_47_length_4413_cov_490.251	370	500	ColRNAI_1	1-130/130	========/======	1/1	100.00	89.31	plasmidfinder	DQ298019
HS61650_S3_contigs.fna	NODE_48_length_4237_cov_146.344	1666	1869	Col8282_1	1-204/207	===============	0/0	98.55	80.88	plasmidfinder	DQ995353
HS71540_S6_contigs.fna	NODE_33_length_6889_cov_327.14	5693	5823	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
HS71540_S6_contigs.fna	NODE_39_length_3957_cov_539.668	933	1063	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
HS71540_S6_contigs.fna	NODE_6_length_297030_cov_28.5823	135502	135947	IncQ2_1	1-446/450	========/======	4/4	98.67	80.80	plasmidfinder	FJ696404
HS71549_S9_contigs.fna	NODE_16_length_91951_cov_41.7303	11229	11871	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
HS71549_S9_contigs.fna	NODE_16_length_91951_cov_41.7303	89890	90151	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
HS71549_S9_contigs.fna	NODE_46_length_5182_cov_568.451	3136	3266	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
HS74_S12_contigs.fna	NODE_15_length_87376_cov_23.6055	16528	16669	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	100.00	plasmidfinder	AP005147
HS91540_S18_contigs.fna	NODE_5_length_210053_cov_20.2302	118543	118988	IncQ2_1	1-446/450	========/======	4/4	98.67	80.80	plasmidfinder	FJ696404
HS91540_S18_contigs.fna	NODE_67_length_4351_cov_198.924	134	264	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
HS91540_S18_contigs.fna	NODE_68_length_3130_cov_382.375	721	851	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
HS91557_S21_contigs.fna	NODE_27_length_5590_cov_385.958	4835	4988	Col156_1	1-154/154	===============	0/0	100.00	94.81	plasmidfinder	NC_009781
HS91557_S21_contigs.fna	NODE_29_length_4392_cov_491.06	3859	3989	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
HS91557_S21_contigs.fna	NODE_31_length_2391_cov_435.664	1360	1490	ColRNAI_1	1-130/130	========/======	1/1	100.00	86.26	plasmidfinder	DQ298019
NC-A1-F2L2_S3.fna	NODE_17_length_91750_cov_41.1501	1782	2043	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-A1-F2L2_S3.fna	NODE_17_length_91750_cov_41.1501	79899	80541	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-A1-F2L2_S3.fna	NODE_40_length_5855_cov_476.893	5092	5243	Col156_1	1-152/154	===============	0/0	98.70	98.03	plasmidfinder	NC_009781
NC-A1-F2L2_S3.fna	NODE_42_length_4363_cov_2142.34	1845	1975	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
NC-B3-F2F9_S15.fna	NODE_16_length_91750_cov_40.3012	1782	2043	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-B3-F2F9_S15.fna	NODE_16_length_91750_cov_40.3012	79899	80541	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-B3-F2F9_S15.fna	NODE_38_length_5855_cov_319.465	5092	5243	Col156_1	1-152/154	===============	0/0	98.70	98.03	plasmidfinder	NC_009781
NC-B3-F2F9_S15.fna	NODE_41_length_4363_cov_962.708	420	550	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
NC-B4-F2F12-M4710_S10.fna	NODE_17_length_91750_cov_40.2435	1782	2043	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-B4-F2F12-M4710_S10.fna	NODE_17_length_91750_cov_40.2435	79899	80541	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-B4-F2F12-M4710_S10.fna	NODE_36_length_5855_cov_395.327	5092	5243	Col156_1	1-152/154	===============	0/0	98.70	98.03	plasmidfinder	NC_009781
NC-B4-F2F12-M4710_S10.fna	NODE_38_length_4363_cov_1621.86	548	678	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
NC-B5-F2F11_S2.fna	NODE_16_length_91743_cov_52.1179	1782	2043	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-B5-F2F11_S2.fna	NODE_16_length_91743_cov_52.1179	79892	80534	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-B5-F2F11_S2.fna	NODE_42_length_5855_cov_373.498	4964	5115	Col156_1	1-152/154	===============	0/0	98.70	98.03	plasmidfinder	NC_009781
NC-B5-F2F11_S2.fna	NODE_45_length_4363_cov_1145.64	420	550	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
NC-B6-F2L6_S4.fna	NODE_16_length_109128_cov_55.1591	92425	92566	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	100.00	plasmidfinder	AP005147
NC-B6-F2L6_S4.fna	NODE_19_length_91750_cov_34.3302	1782	2043	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-B6-F2L6_S4.fna	NODE_19_length_91750_cov_34.3302	79899	80541	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-B6-F2L6_S4.fna	NODE_46_length_5855_cov_311.367	4964	5115	Col156_1	1-152/154	===============	0/0	98.70	98.03	plasmidfinder	NC_009781
NC-B6-F2L6_S4.fna	NODE_48_length_4363_cov_814.51	548	678	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
NC-B6-F2L6_S4.fna	NODE_51_length_2373_cov_80.5419	1635	1827	ColpVC_1	1-193/193	===============	0/0	100.00	96.89	plasmidfinder	JX133088
NC-B8-F2F3_S1.fna	NODE_16_length_91750_cov_46.3331	11210	11852	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-B8-F2F3_S1.fna	NODE_16_length_91750_cov_46.3331	89708	89969	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-B8-F2F3_S1.fna	NODE_40_length_5855_cov_534.551	4964	5115	Col156_1	1-152/154	===============	0/0	98.70	98.03	plasmidfinder	NC_009781
NC-B8-F2F3_S1.fna	NODE_42_length_4363_cov_2188.83	420	550	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
NC-C5-F2S17-M4710_S12.fna	NODE_17_length_91744_cov_37.2491	1782	2043	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-C5-F2S17-M4710_S12.fna	NODE_17_length_91744_cov_37.2491	79893	80535	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-C5-F2S17-M4710_S12.fna	NODE_39_length_5855_cov_382.719	4964	5115	Col156_1	1-152/154	===============	0/0	98.70	98.03	plasmidfinder	NC_009781
NC-C5-F2S17-M4710_S12.fna	NODE_41_length_4363_cov_1519.57	2404	2534	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
NC-E4-F1L8_S16.fna	NODE_33_length_33469_cov_22.7237	23156	23297	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	97.89	plasmidfinder	AP005147
NC-E4-F1L8_S16.fna	NODE_42_length_10943_cov_17.4276	4755	5016	IncFII_1_pSFO	1-258/258	========/======	4/6	99.61	89.35	plasmidfinder	AF401292
NC-E4-F1L8_S16.fna	NODE_47_length_6686_cov_34.8451	2281	2653	IncX1_3	1-373/373	===============	0/0	100.00	100.00	plasmidfinder	CP001123
NC-E4-F1L8_S16.fna	NODE_53_length_4487_cov_21.7433	2524	3205	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-F0077_S6.fna	NODE_19_length_72110_cov_37.8091	66502	66998	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-F0077_S6.fna	NODE_19_length_72110_cov_37.8091	66740	66998	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-F0077_S6.fna	NODE_30_length_10340_cov_31.7531	7659	8340	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-F0081_S16.fna	NODE_20_length_48819_cov_35.308	43211	43707	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-F0081_S16.fna	NODE_20_length_48819_cov_35.308	43449	43707	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-F0081_S16.fna	NODE_27_length_16753_cov_27.1367	2001	2682	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-F0088_S8.fna	NODE_19_length_72256_cov_39.4205	66648	67144	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-F0088_S8.fna	NODE_19_length_72256_cov_39.4205	66886	67144	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-F0088_S8.fna	NODE_27_length_16714_cov_27.5423	1962	2643	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-F0095_S14.fna	NODE_19_length_87487_cov_42.3108	3490	3906	IncA/C2_1	1-417/417	===============	0/0	100.00	100.00	plasmidfinder	JN157804
NC-F0095_S14.fna	NODE_42_length_4808_cov_487.958	3602	3732	ColRNAI_1	1-130/130	========/======	1/1	100.00	83.97	plasmidfinder	DQ298019
NC-F0305_S13.fna	NODE_18_length_72110_cov_32.933	5113	5609	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-F0305_S13.fna	NODE_18_length_72110_cov_32.933	5113	5371	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-F0305_S13.fna	NODE_29_length_16753_cov_22.9448	2001	2682	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-F1F4_S9.fna	NODE_21_length_48819_cov_34.3998	43211	43707	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-F1F4_S9.fna	NODE_21_length_48819_cov_34.3998	43449	43707	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-F1F4_S9.fna	NODE_33_length_16753_cov_27.3123	2001	2682	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-F1F5_S3.fna	NODE_21_length_48862_cov_41.1529	43211	43707	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-F1F5_S3.fna	NODE_21_length_48862_cov_41.1529	43449	43707	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-F1F5_S3.fna	NODE_33_length_16796_cov_30.4003	2044	2725	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-F1F6_S5.fna	NODE_21_length_48819_cov_34.5305	43211	43707	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-F1F6_S5.fna	NODE_21_length_48819_cov_34.5305	43449	43707	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-F1F6_S5.fna	NODE_32_length_16753_cov_27.6323	2001	2682	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-F1I8_S1.fna	NODE_21_length_48862_cov_32.9222	43211	43707	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-F1I8_S1.fna	NODE_21_length_48862_cov_32.9222	43449	43707	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-F1I8_S1.fna	NODE_34_length_16796_cov_25.3025	2044	2725	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-F1L3_S11.fna	NODE_21_length_48818_cov_38.084	5113	5609	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-F1L3_S11.fna	NODE_21_length_48818_cov_38.084	5113	5371	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-F1L3_S11.fna	NODE_33_length_16753_cov_27.8629	2001	2682	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-F1L4_S7.fna	NODE_22_length_48819_cov_36.9513	43211	43707	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-F1L4_S7.fna	NODE_22_length_48819_cov_36.9513	43449	43707	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-F1L4_S7.fna	NODE_34_length_16753_cov_28.4616	2001	2682	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-I0309_S2.fna	NODE_13_length_107343_cov_79.0584	89713	89854	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	100.00	plasmidfinder	AP005147
NC-I0309_S2.fna	NODE_18_length_37824_cov_118.646	3481	3854	IncX1_1	1-374/374	===============	0/0	100.00	98.93	plasmidfinder	EU370913
NC-I0309_S2.fna	NODE_24_length_2223_cov_2050.17	1738	1930	ColpVC_1	1-193/193	===============	0/0	100.00	98.96	plasmidfinder	JX133088
NC-I0328_S4.fna	NODE_21_length_48862_cov_30.9234	43211	43707	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-I0328_S4.fna	NODE_21_length_48862_cov_30.9234	43449	43707	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-I0328_S4.fna	NODE_29_length_16796_cov_22.5641	2044	2725	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-L0052_S12.fna	NODE_20_length_70186_cov_31.1813	42663	43159	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-L0052_S12.fna	NODE_20_length_70186_cov_31.1813	42901	43159	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-L0052_S12.fna	NODE_30_length_16753_cov_23.6489	2001	2682	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-L0085_S10.fna	NODE_19_length_48862_cov_32.7053	43211	43707	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-L0085_S10.fna	NODE_19_length_48862_cov_32.7053	43449	43707	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-L0085_S10.fna	NODE_27_length_16796_cov_23.0349	2044	2725	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-L0300_S15.fna	NODE_19_length_72110_cov_32.0637	5113	5609	IncFIC(FII)_1	1-499/499	========/======	1/2	99.60	95.59	plasmidfinder	AP001918
NC-L0300_S15.fna	NODE_19_length_72110_cov_32.0637	5113	5371	IncFII_1_pSFO	1-258/258	========/======	3/3	99.61	90.77	plasmidfinder	AF401292
NC-L0300_S15.fna	NODE_27_length_16753_cov_24.2154	2001	2682	IncFIB(AP001918)_1	1-682/682	===============	0/0	100.00	98.39	plasmidfinder	AP001918
NC-NCF3D0-L2_S5.fna	NODE_12_length_93935_cov_51.9325	61319	61460	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	100.00	plasmidfinder	AP005147
NC-NCF3D0-L5_S9.fna	NODE_29_length_3350_cov_1223.02	1142	1270	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
NC-NCF3D0-L5_S9.fna	NODE_30_length_2392_cov_948.317	1996	2126	ColRNAI_1	1-130/130	========/======	1/1	100.00	85.50	plasmidfinder	DQ298019
NC-NCF3D0-L8-M4710_S2.fna	NODE_17_length_91942_cov_48.0199	11229	11871	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-NCF3D0-L8-M4710_S2.fna	NODE_17_length_91942_cov_48.0199	89881	90142	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-NCF3D0-L8-M4710_S2.fna	NODE_39_length_5182_cov_602.823	2933	3063	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF3D14-14-M4710_S4.fna	NODE_16_length_91969_cov_41.4626	11229	11871	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-NCF3D14-14-M4710_S4.fna	NODE_16_length_91969_cov_41.4626	89908	90169	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-NCF3D14-14-M4710_S4.fna	NODE_42_length_5182_cov_671.991	984	1114	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF3D21-4-M4710_S6.fna	NODE_15_length_91969_cov_33.8162	11229	11871	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-NCF3D21-4-M4710_S6.fna	NODE_15_length_91969_cov_33.8162	89908	90169	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-NCF3D21-4-M4710_S6.fna	NODE_40_length_5182_cov_634.092	2202	2332	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF5D0-A4_S12.fna	NODE_16_length_113814_cov_44.6787	111329	111774	IncQ2_1	1-446/450	========/======	4/4	98.67	80.80	plasmidfinder	FJ696404
NC-NCF5D0-A4_S12.fna	NODE_50_length_5503_cov_509.019	62	192	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.02	plasmidfinder	DQ298019
NC-NCF5D0-A4_S12.fna	NODE_50_length_5503_cov_509.019	3830	3960	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF5D0-A4_S12.fna	NODE_56_length_4330_cov_287.607	62	192	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF5D0-A4_S12.fna	NODE_57_length_3957_cov_494.316	1663	1793	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
NC-NCF5D0-L4_S14.fna	NODE_16_length_114050_cov_43.1865	111565	112010	IncQ2_1	1-446/450	========/======	4/4	98.67	80.80	plasmidfinder	FJ696404
NC-NCF5D0-L4_S14.fna	NODE_50_length_5503_cov_504.315	62	192	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.02	plasmidfinder	DQ298019
NC-NCF5D0-L4_S14.fna	NODE_50_length_5503_cov_504.315	3830	3960	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF5D0-L4_S14.fna	NODE_55_length_4330_cov_282.074	62	192	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF5D0-L4_S14.fna	NODE_56_length_3957_cov_413.384	2037	2167	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
NC-NCF6D0-A13-M4710_S14.fna	NODE_24_length_4323_cov_550.805	3519	3649	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF6D0-A18-M4710_S16.fna	NODE_26_length_4323_cov_751.152	3647	3777	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF6D0-A19_S8.fna	NODE_25_length_4323_cov_457.74	3519	3649	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF6D0-A20_S10.fna	NODE_23_length_4323_cov_455.582	3647	3777	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF6D0-A4-M4710_S8.fna	NODE_23_length_4323_cov_680.968	3572	3702	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF6D0-A8_S6.fna	NODE_15_length_92031_cov_30.8088	65748	66512	IncY_1	1-765/765	===============	0/0	100.00	99.74	plasmidfinder	K02380
NC-NCF6D0-A8_S6.fna	NODE_29_length_40212_cov_63.3852	34288	34630	IncX3_1	37-374/374	.=======/======	4/5	90.37	80.17	plasmidfinder	JN247852
NC-NCF6D0-A8_S6.fna	NODE_29_length_40212_cov_63.3852	35277	35650	IncX1_1	1-374/374	===============	0/0	100.00	98.66	plasmidfinder	EU370913
NC-NCF6D0-A8_S6.fna	NODE_45_length_5437_cov_363.702	3645	3764	ColRNAI_1	13-130/130	.=======/======	2/2	90.77	89.17	plasmidfinder	DQ298019
NC-NCF6D0-A8_S6.fna	NODE_48_length_4640_cov_40.2451	202	651	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
NC-NCF6D0-L8_S11_edited.fna	NODE_277_length_3185_cov_876.107	2931	3061	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-NCF6D0-L9_S13.fna	NODE_25_length_4323_cov_465.64	3519	3649	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
NC-PS091_S11_contigs.fna	NODE_36_length_34869_cov_32.4071	2712	3038	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
NC-PS091_S11_contigs.fna	NODE_36_length_34869_cov_32.4071	3657	4251	TrfA_1	2-596/596	========/======	2/2	99.66	80.20	plasmidfinder	CP11611
NC-PS091_S11_contigs.fna	NODE_36_length_34869_cov_32.4071	21022	21651	IncHI2A_1	1-630/630	===============	0/0	100.00	99.52	plasmidfinder	BX664015
NC-PS091_S11_contigs.fna	NODE_41_length_22173_cov_28.5069	18766	19138	IncX1_3	1-373/373	===============	0/0	100.00	100.00	plasmidfinder	CP001123
NC-PS134_S14_contigs.fna	NODE_36_length_29998_cov_19.0055	24235	24376	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	100.00	plasmidfinder	AP005147
NC-PS134_S14_contigs.fna	NODE_37_length_29205_cov_40.4941	15358	15987	IncHI2A_1	1-630/630	===============	0/0	100.00	99.52	plasmidfinder	BX664015
NC-PS134_S14_contigs.fna	NODE_43_length_16628_cov_40.9132	13417	13743	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
NC-PS134_S14_contigs.fna	NODE_43_length_16628_cov_40.9132	14362	14956	TrfA_1	2-596/596	========/======	2/2	99.66	80.20	plasmidfinder	CP11611
NC-PS134_S14_contigs.fna	NODE_46_length_13514_cov_37.6213	3941	4313	IncX1_3	1-373/373	===============	0/0	100.00	100.00	plasmidfinder	CP001123
NC-PS134_S14_contigs.fna	NODE_62_length_4145_cov_1115.6	1926	2056	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.02	plasmidfinder	DQ298019
NC-PS134_S14_contigs.fna	NODE_69_length_2216_cov_1006.06	1220	1452	Col(BS512)_1	1-233/233	===============	0/0	100.00	100.00	plasmidfinder	NC_010656
NC-PS134_S14_contigs.fna	NODE_69_length_2216_cov_1006.06	1524	1716	Col(BS512)_1__NC_010656_dupe	1-193/193	===============	0/0	100.00	100.00	plasmidfinder	
NC-PS137_S17_contigs.fna	NODE_43_length_24234_cov_24.2587	8831	9425	TrfA_1	2-596/596	========/======	2/2	99.66	80.20	plasmidfinder	CP11611
NC-PS137_S17_contigs.fna	NODE_43_length_24234_cov_24.2587	10044	10370	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
NC-PS137_S17_contigs.fna	NODE_47_length_17927_cov_21.3938	9099	9728	IncHI2A_1	1-630/630	===============	0/0	100.00	99.52	plasmidfinder	BX664015
NC-PS137_S17_contigs.fna	NODE_54_length_12457_cov_30.4734	3091	3463	IncX1_3	1-373/373	===============	0/0	100.00	100.00	plasmidfinder	CP001123
NC-PS188_S20_contigs.fna	NODE_23_length_77773_cov_22.268	32809	32950	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	100.00	plasmidfinder	AP005147
NC-PS188_S20_contigs.fna	NODE_32_length_41790_cov_28.626	13865	14191	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
NC-PS188_S20_contigs.fna	NODE_32_length_41790_cov_28.626	14810	15404	TrfA_1	2-596/596	========/======	2/2	99.66	80.20	plasmidfinder	CP11611
NC-PS188_S20_contigs.fna	NODE_32_length_41790_cov_28.626	32175	32804	IncHI2A_1	1-630/630	===============	0/0	100.00	99.52	plasmidfinder	BX664015
NC-PS188_S20_contigs.fna	NODE_44_length_23561_cov_28.9785	18766	19138	IncX1_3	1-373/373	===============	0/0	100.00	100.00	plasmidfinder	CP001123
NC-S1151_S23_contigs.fna	NODE_24_length_73334_cov_20.2108	1928	2189	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-S1151_S23_contigs.fna	NODE_38_length_23495_cov_22.6104	6862	7504	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-S1151_S23_contigs.fna	NODE_57_length_874_cov_2047.84	326	456	ColRNAI_1	1-130/130	========/======	1/1	100.00	89.31	plasmidfinder	DQ298019
NC-S1163_S3_contigs.fna	NODE_17_length_96640_cov_22.0862	41960	42221	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-S1163_S3_contigs.fna	NODE_17_length_96640_cov_22.0862	60013	60655	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-S1163_S3_contigs.fna	NODE_56_length_874_cov_1812.04	326	456	ColRNAI_1	1-130/130	========/======	1/1	100.00	89.31	plasmidfinder	DQ298019
NC-S1192_S6_contigs.fna	NODE_28_length_3779_cov_1947.08	1559	1689	ColRNAI_1	1-130/130	========/======	1/1	100.00	82.44	plasmidfinder	DQ298019
NC-S1347_S21_contigs.fna	NODE_25_length_68639_cov_18.6769	50913	51054	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	97.89	plasmidfinder	AP005147
NC-S1347_S21_contigs.fna	NODE_33_length_47598_cov_7.71829	2684	3448	IncY_1	1-765/765	===============	0/0	100.00	98.69	plasmidfinder	K02380
NC-S1349_S24_contigs.fna	NODE_16_length_93461_cov_14.0208	25378	26142	IncY_1	1-765/765	===============	0/0	100.00	98.69	plasmidfinder	K02380
NC-S1349_S24_contigs.fna	NODE_23_length_68979_cov_28.7748	17031	17172	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	97.89	plasmidfinder	AP005147
NC-S1429_S4_contigs.fna	NODE_24_length_3779_cov_1182.81	1442	1572	ColRNAI_1	1-130/130	========/======	1/1	100.00	82.44	plasmidfinder	DQ298019
NC-S1432_S7_contigs.fna	NODE_34_length_25488_cov_90.9272	14736	15062	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
NC-S1432_S7_contigs.fna	NODE_34_length_25488_cov_90.9272	15681	16275	TrfA_1	2-596/596	========/======	2/2	99.66	80.20	plasmidfinder	CP11611
NC-S1432_S7_contigs.fna	NODE_38_length_17145_cov_84.2484	11812	12441	IncHI2A_1	1-630/630	===============	0/0	100.00	99.52	plasmidfinder	BX664015
NC-S1432_S7_contigs.fna	NODE_45_length_5536_cov_534.065	587	717	ColRNAI_1	1-130/130	========/======	1/1	100.00	83.97	plasmidfinder	DQ298019
NC-S1432_S7_contigs.fna	NODE_53_length_3350_cov_2101.42	1379	1507	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
NC-S1433_S10_contigs.fna	NODE_37_length_25488_cov_75.6904	14736	15062	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
NC-S1433_S10_contigs.fna	NODE_37_length_25488_cov_75.6904	15681	16275	TrfA_1	2-596/596	========/======	2/2	99.66	80.20	plasmidfinder	CP11611
NC-S1433_S10_contigs.fna	NODE_41_length_17145_cov_69.8225	11812	12441	IncHI2A_1	1-630/630	===============	0/0	100.00	99.52	plasmidfinder	BX664015
NC-S1433_S10_contigs.fna	NODE_47_length_5536_cov_746.724	244	374	ColRNAI_1	1-130/130	========/======	1/1	100.00	83.97	plasmidfinder	DQ298019
NC-S1433_S10_contigs.fna	NODE_54_length_3350_cov_2797	864	992	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
NC-S1435_S13_contigs.fna	NODE_16_length_92109_cov_38.5951	24404	25168	IncY_1	1-765/765	===============	0/0	100.00	99.22	plasmidfinder	K02380
NC-S1435_S13_contigs.fna	NODE_27_length_14652_cov_81.0306	8327	8886	IncFIB(K)_1_Kpn3	1-560/560	===============	0/0	100.00	98.93	plasmidfinder	JN233704
NC-S1437_S16_contigs.fna	NODE_28_length_14042_cov_18.3147	8327	8886	IncFIB(K)_1_Kpn3	1-560/560	===============	0/0	100.00	98.93	plasmidfinder	JN233704
NC-S1439_S18_contigs.fna	NODE_27_length_14042_cov_55.9557	8327	8886	IncFIB(K)_1_Kpn3	1-560/560	===============	0/0	100.00	98.93	plasmidfinder	JN233704
NC-S1744_S20_contigs.fna	NODE_22_length_9600_cov_1054.72	5393	5842	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
NC-S1744_S20_contigs.fna	NODE_25_length_3971_cov_3625.09	1458	1588	ColRNAI_1	1-130/130	========/======	1/1	100.00	85.50	plasmidfinder	DQ298019
NC-S1763_S5_contigs.fna	NODE_27_length_9600_cov_743.158	5521	5970	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
NC-S1763_S5_contigs.fna	NODE_31_length_3971_cov_1820.24	1458	1588	ColRNAI_1	1-130/130	========/======	1/1	100.00	85.50	plasmidfinder	DQ298019
NC-S442_S8_contigs.fna	NODE_17_length_94107_cov_20.3612	41942	42203	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
NC-S442_S8_contigs.fna	NODE_17_length_94107_cov_20.3612	57288	57930	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
NC-S442_S8_contigs.fna	NODE_40_length_6774_cov_171.715	4275	4405	ColRNAI_1	1-130/130	========/======	1/1	100.00	88.55	plasmidfinder	DQ298019
NC-S442_S8_contigs.fna	NODE_44_length_3315_cov_333.781	547	677	ColRNAI_1	1-130/130	========/======	1/1	100.00	89.31	plasmidfinder	DQ298019
NC-S617_S11_contigs.fna	NODE_33_length_9450_cov_141.64	1637	1813	ColE10_1	1-177/177	===============	0/0	100.00	100.00	plasmidfinder	X01654
NC-S617_S11_contigs.fna	NODE_37_length_4087_cov_758.232	1877	2007	ColRNAI_1	1-130/130	========/======	1/1	100.00	82.44	plasmidfinder	DQ298019
NC-S617_S11_contigs.fna	NODE_40_length_2739_cov_1169.17	310	440	ColRNAI_1	1-130/130	========/======	1/1	100.00	85.50	plasmidfinder	DQ298019
NC-S726_S14_contigs.fna	NODE_32_length_3779_cov_1136.95	2310	2440	ColRNAI_1	1-130/130	========/======	1/1	100.00	82.44	plasmidfinder	DQ298019
NC-S801_S17_contigs.fna	NODE_32_length_2658_cov_657.763	1970	2080	ColRNAI_1	19-128/130	..======/======	4/5	83.08	84.96	plasmidfinder	DQ298019
NC-S801_S17_contigs.fna	NODE_33_length_2614_cov_978.826	966	1096	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.02	plasmidfinder	DQ298019
NC-S802_S19_contigs.fna	NODE_25_length_4145_cov_1734.12	1099	1229	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.02	plasmidfinder	DQ298019
NC-S802_S19_contigs.fna	NODE_26_length_2698_cov_1167.53	1988	2098	ColRNAI_1	19-128/130	..======/======	4/5	83.08	84.96	plasmidfinder	DQ298019
NC-S803_S21_contigs.fna	NODE_32_length_3320_cov_985.812	2917	3047	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.02	plasmidfinder	DQ298019
NC-S803_S21_contigs.fna	NODE_35_length_2697_cov_632.658	1969	2079	ColRNAI_1	19-128/130	..======/======	4/5	83.08	84.96	plasmidfinder	DQ298019
NC-S968_S15_contigs.fna	NODE_17_length_50255_cov_44.6103	44986	45246	IncFII_1	1-261/261	===============	0/0	100.00	100.00	plasmidfinder	AY458016
NC-S968_S15_contigs.fna	NODE_40_length_2589_cov_2111.53	388	518	ColRNAI_1	1-130/130	========/======	1/1	100.00	86.26	plasmidfinder	DQ298019
SRR1815213.fna	NODE_100_length_216_cov_180.727	1	109	ColRNAI_1	1-109/130	=============..	0/0	83.85	90.83	plasmidfinder	DQ298019
SRR1815213.fna	NODE_9_length_146772_cov_21.5634	10759	11204	IncQ2_1	1-446/450	========/======	4/4	98.67	80.80	plasmidfinder	FJ696404
SRR1815214.fna	NODE_123_length_119_cov_114.476	11	119	ColRNAI_1	1-109/130	=============..	0/0	83.85	90.83	plasmidfinder	DQ298019
SRR1815214.fna	NODE_25_length_61625_cov_12.5173	10759	11204	IncQ2_1	1-446/450	========/======	4/4	98.67	80.80	plasmidfinder	FJ696404
SRR1815218.fna	NODE_35_length_23954_cov_28.0792	15923	16064	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	99.30	plasmidfinder	AP005147
SRR1815218.fna	NODE_47_length_5984_cov_32.1039	728	921	Col(Ye4449)_1	1-194/194	===============	0/0	100.00	80.41	plasmidfinder	FJ696405
SRR1815218.fna	NODE_49_length_5361_cov_39.9674	728	921	Col(Ye4449)_1	1-194/194	===============	0/0	100.00	81.96	plasmidfinder	FJ696405
SRR1815231.fna	NODE_22_length_61373_cov_22.7317	50422	50867	IncQ2_1	1-446/450	========/======	4/4	98.67	80.80	plasmidfinder	FJ696404
SRR1815231.fna	NODE_48_length_4388_cov_2.41081	4187	4317	ColRNAI_1	1-130/130	========/======	1/1	100.00	88.55	plasmidfinder	DQ298019
SRR1815232.fna	NODE_8_length_227873_cov_21.4402	107008	107453	IncQ2_1	1-446/450	========/======	4/4	98.67	80.80	plasmidfinder	FJ696404
SRR1815233.fna	NODE_15_length_118156_cov_16.8288	107205	107650	IncQ2_1	1-446/450	========/======	4/4	98.67	80.80	plasmidfinder	FJ696404
SRR1815234.fna	NODE_26_length_61398_cov_10.4873	50447	50892	IncQ2_1	1-446/450	========/======	4/4	98.67	80.80	plasmidfinder	FJ696404
SRR1815263.fna	NODE_15_length_93414_cov_17.37	23683	24447	IncY_1	1-765/765	===============	0/0	100.00	98.69	plasmidfinder	K02380
SRR1815263.fna	NODE_25_length_68725_cov_33.0353	59710	59851	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	100.00	plasmidfinder	AP005147
SRR1815263.fna	NODE_40_length_5466_cov_116.856	263	393	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR1815263.fna	NODE_44_length_4392_cov_86.7003	1190	1320	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR1815263.fna	NODE_46_length_3907_cov_160.205	583	713	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR1815272.fna	NODE_29_length_48854_cov_21.7383	29554	29970	IncA/C2_1	1-417/417	===============	0/0	100.00	99.76	plasmidfinder	JN157804
SRR1815273.fna	NODE_16_length_93973_cov_14.813	23886	24650	IncY_1	1-765/765	===============	0/0	100.00	98.69	plasmidfinder	K02380
SRR1815273.fna	NODE_26_length_61372_cov_18.0096	50421	50866	IncQ2_1	1-446/450	========/======	4/4	98.67	80.80	plasmidfinder	FJ696404
SRR1815273.fna	NODE_43_length_4128_cov_181.811	1409	1539	ColRNAI_1	1-130/130	========/======	1/1	100.00	85.50	plasmidfinder	DQ298019
SRR1815275.fna	NODE_16_length_101509_cov_21.1448	34012	34153	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	100.00	plasmidfinder	AP005147
SRR1815275.fna	NODE_27_length_4992_cov_57.1571	2773	2903	ColRNAI_1	1-130/130	========/======	1/1	100.00	86.26	plasmidfinder	DQ298019
SRR1815277.fna	NODE_10_length_182434_cov_11.4075	104312	105278	pENTAS02_1	1-979/979	========/======	6/18	98.47	86.56	plasmidfinder	CP003028
SRR1815277.fna	NODE_48_length_12115_cov_14.9787	5317	5959	IncFIB(pB171)_1_pB171	1-643/643	===============	0/0	100.00	91.76	plasmidfinder	AB024946
SRR1815278.fna	NODE_13_length_120786_cov_21.7369	62270	62911	IncFIB(pB171)_1_pB171	1-642/643	===============	0/0	99.84	84.89	plasmidfinder	AB024946
SRR1815279.fna	NODE_27_length_68067_cov_12.0169	9551	10192	IncFIB(pB171)_1_pB171	1-642/643	===============	0/0	99.84	84.89	plasmidfinder	AB024946
SRR1815280.fna	NODE_11_length_185593_cov_28.0258	78365	79331	pENTAS02_1	1-979/979	========/======	7/16	98.57	87.05	plasmidfinder	CP003028
SRR1815280.fna	NODE_24_length_10965_cov_52.6301	6744	7193	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
SRR1815281.fna	NODE_38_length_4495_cov_171.573	546	676	ColRNAI_1	1-130/130	========/======	1/1	100.00	83.97	plasmidfinder	DQ298019
SRR1815281.fna	NODE_39_length_3907_cov_200.073	505	635	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR1815281.fna	NODE_41_length_3334_cov_182.392	1528	1655	ColRNAI_1	1-128/130	===============	0/0	98.46	89.06	plasmidfinder	DQ298019
SRR1815283.fna	NODE_36_length_9082_cov_19.9936	5023	5582	IncFIB(K)_1_Kpn3	1-560/560	===============	0/0	100.00	98.93	plasmidfinder	JN233704
SRR1815285.fna	NODE_10_length_215619_cov_16.511	78341	79307	pENTAS02_1	1-979/979	========/======	7/16	98.57	87.05	plasmidfinder	CP003028
SRR1815285.fna	NODE_21_length_10965_cov_68.3417	6744	7193	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
SRR1815285.fna	NODE_24_length_4670_cov_171.853	2385	2515	ColRNAI_1	1-130/130	========/======	1/1	100.00	90.08	plasmidfinder	DQ298019
SRR1815286.fna	NODE_30_length_32704_cov_65.6223	6213	6689	IncN2_1	1-477/477	===============	0/0	100.00	98.74	plasmidfinder	JF785549
SRR1815286.fna	NODE_35_length_26072_cov_56.8914	23038	23620	IncFII(pKPX1)	1-577/577	========/======	2/6	100.00	77.70	plasmidfinder	AP012055
SRR1815286.fna	NODE_38_length_17074_cov_29.4924	10285	10927	IncFIB(pB171)_1_pB171	1-643/643	===============	0/0	100.00	91.76	plasmidfinder	AB024946
SRR1815288.fna	NODE_24_length_61357_cov_9.39011	50406	50851	IncQ2_1	1-446/450	========/======	4/4	98.67	80.80	plasmidfinder	FJ696404
SRR1815291.fna	NODE_34_length_23953_cov_30.5546	7891	8032	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	99.30	plasmidfinder	AP005147
SRR1815291.fna	NODE_42_length_5984_cov_113.829	4494	4687	Col(Ye4449)_1	1-194/194	===============	0/0	100.00	80.41	plasmidfinder	FJ696405
SRR1815291.fna	NODE_44_length_5361_cov_156.427	3871	4064	Col(Ye4449)_1	1-194/194	===============	0/0	100.00	81.96	plasmidfinder	FJ696405
SRR1815293.fna	NODE_40_length_24515_cov_21.1333	16484	16625	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	99.30	plasmidfinder	AP005147
SRR1815293.fna	NODE_52_length_5984_cov_80.9917	728	921	Col(Ye4449)_1	1-194/194	===============	0/0	100.00	80.41	plasmidfinder	FJ696405
SRR1815293.fna	NODE_53_length_5361_cov_102.792	728	921	Col(Ye4449)_1	1-194/194	===============	0/0	100.00	81.96	plasmidfinder	FJ696405
SRR1815296.fna	NODE_35_length_23967_cov_10.0417	7288	7429	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	100.00	plasmidfinder	AP005147
SRR1815296.fna	NODE_49_length_7849_cov_22.395	2112	2917	IncP(6)_1	1-806/806	===============	0/0	100.00	99.26	plasmidfinder	JF785550
SRR1815296.fna	NODE_55_length_5540_cov_128.578	4934	5087	Col156_1	1-154/154	===============	0/0	100.00	94.81	plasmidfinder	NC_009781
SRR1815296.fna	NODE_62_length_3210_cov_112.089	1174	1291	ColRNAI_1	1-118/130	==============.	0/0	90.77	86.44	plasmidfinder	DQ298019
SRR1815297.fna	NODE_38_length_9550_cov_47.016	2019	2468	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
SRR1815297.fna	NODE_44_length_3729_cov_60.0748	2836	2966	ColRNAI_1	1-130/130	========/======	1/1	100.00	82.44	plasmidfinder	DQ298019
SRR1815299.fna	NODE_26_length_53529_cov_15.8061	13228	13857	IncHI2A_1	1-630/630	===============	0/0	100.00	99.52	plasmidfinder	BX664015
SRR1815299.fna	NODE_26_length_53529_cov_15.8061	27512	28106	TrfA_1	2-596/596	========/======	2/2	99.66	80.20	plasmidfinder	CP11611
SRR1815299.fna	NODE_26_length_53529_cov_15.8061	28725	29051	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3168989.fna	NODE_15_length_94379_cov_19.2421	7050	7692	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3168989.fna	NODE_15_length_94379_cov_19.2421	22777	23038	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3168989.fna	NODE_43_length_5182_cov_452.568	1915	2045	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3168990.fna	NODE_23_length_65039_cov_16.8529	7051	7693	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3168990.fna	NODE_23_length_65039_cov_16.8529	22778	23039	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3168990.fna	NODE_43_length_5182_cov_273.25	3079	3209	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3168991.fna	NODE_16_length_94424_cov_16.8561	7068	7710	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3168991.fna	NODE_16_length_94424_cov_16.8561	22795	23056	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3168991.fna	NODE_45_length_5182_cov_303.158	3072	3202	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3168992.fna	NODE_29_length_6034_cov_408.44	3475	3668	Col(Ye4449)_1	1-194/194	===============	0/0	100.00	80.41	plasmidfinder	FJ696405
SRR3168993.fna	NODE_27_length_61681_cov_9.22104	36178	36820	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3168993.fna	NODE_27_length_61681_cov_9.22104	51905	52166	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3168993.fna	NODE_42_length_5182_cov_157.081	3079	3209	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3168994.fna	NODE_36_length_19461_cov_5.31525	11387	12029	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3168994.fna	NODE_37_length_10448_cov_5.05116	9498	9759	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3168994.fna	NODE_45_length_5182_cov_327.389	3079	3209	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3168995.fna	NODE_36_length_10764_cov_4.98026	3159	3801	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3168995.fna	NODE_46_length_5182_cov_245.805	2223	2353	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3168996.fna	NODE_26_length_52560_cov_11.3903	29521	29782	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3168996.fna	NODE_26_length_52560_cov_11.3903	44867	45509	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3168996.fna	NODE_42_length_5182_cov_468.597	1883	2013	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3168997.fna	NODE_29_length_32506_cov_10.298	9468	9729	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3168997.fna	NODE_29_length_32506_cov_10.298	24814	25456	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3168997.fna	NODE_44_length_5182_cov_524.611	1883	2013	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3168998.fna	NODE_32_length_31726_cov_8.75499	1959	2220	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3168998.fna	NODE_38_length_19044_cov_10.2241	11356	11998	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3168998.fna	NODE_43_length_5182_cov_534.183	2304	2434	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3168999.fna	NODE_31_length_38900_cov_6.53821	36084	36726	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3168999.fna	NODE_39_length_11570_cov_5.89513	1882	2143	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3168999.fna	NODE_45_length_5182_cov_381.593	3061	3191	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3169003.fna	NODE_24_length_31852_cov_6.32826	21804	21945	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	100.00	plasmidfinder	AP005147
SRR3169004.fna	NODE_38_length_5182_cov_173.101	4082	4212	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3169005.fna	NODE_26_length_52532_cov_8.15037	7042	7684	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3169005.fna	NODE_26_length_52532_cov_8.15037	22769	23030	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3169005.fna	NODE_43_length_5182_cov_526.003	3079	3209	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3169006.fna	NODE_15_length_94101_cov_7.41181	1928	2189	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3169006.fna	NODE_15_length_94101_cov_7.41181	80175	80817	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3169006.fna	NODE_41_length_5182_cov_579.721	3919	4049	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3169007.fna	NODE_50_length_5182_cov_101.593	865	995	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3169007.fna	NODE_54_length_3957_cov_40.8648	591	721	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR3169008.fna	NODE_32_length_8520_cov_54.8915	823	999	ColE10_1	1-177/177	===============	0/0	100.00	100.00	plasmidfinder	X01654
SRR3169008.fna	NODE_35_length_3957_cov_373.821	698	828	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR3169009.fna	NODE_27_length_8520_cov_82.7503	823	999	ColE10_1	1-177/177	===============	0/0	100.00	100.00	plasmidfinder	X01654
SRR3169009.fna	NODE_31_length_3957_cov_578.073	1663	1793	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR3169009.fna	NODE_40_length_1532_cov_489.34	1379	1507	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3169010.fna	NODE_27_length_8520_cov_171.626	823	999	ColE10_1	1-177/177	===============	0/0	100.00	100.00	plasmidfinder	X01654
SRR3169010.fna	NODE_32_length_3957_cov_1321.9	1663	1793	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR3169010.fna	NODE_33_length_3350_cov_1011.31	1379	1507	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3169011.fna	NODE_33_length_8520_cov_49.4898	823	999	ColE10_1	1-177/177	===============	0/0	100.00	100.00	plasmidfinder	X01654
SRR3169011.fna	NODE_39_length_3957_cov_336.13	531	661	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR3169011.fna	NODE_40_length_3350_cov_297.512	2703	2831	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3199279.fna	NODE_32_length_8520_cov_87.5893	823	999	ColE10_1	1-177/177	===============	0/0	100.00	100.00	plasmidfinder	X01654
SRR3199279.fna	NODE_35_length_3957_cov_950.015	933	1063	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR3199279.fna	NODE_36_length_3347_cov_882.05	2081	2209	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3199280.fna	NODE_30_length_8520_cov_48.314	823	999	ColE10_1	1-177/177	===============	0/0	100.00	100.00	plasmidfinder	X01654
SRR3199280.fna	NODE_36_length_3957_cov_395.998	1663	1793	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR3199280.fna	NODE_37_length_3350_cov_337.456	1142	1270	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3199281.fna	NODE_30_length_8520_cov_87.7541	823	999	ColE10_1	1-177/177	===============	0/0	100.00	100.00	plasmidfinder	X01654
SRR3199281.fna	NODE_33_length_3957_cov_583.75	587	717	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR3199281.fna	NODE_34_length_3350_cov_494.08	1379	1507	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3199282.fna	NODE_27_length_50292_cov_11.264	13752	14011	IncFII_1_pSFO	1-258/258	========/======	2/2	100.00	92.31	plasmidfinder	AF401292
SRR3199282.fna	NODE_37_length_8520_cov_65.2783	823	999	ColE10_1	1-177/177	===============	0/0	100.00	100.00	plasmidfinder	X01654
SRR3199282.fna	NODE_44_length_3957_cov_473.13	1603	1733	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR3199282.fna	NODE_45_length_3323_cov_365.105	1115	1243	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3199283.fna	NODE_32_length_8520_cov_49.6607	823	999	ColE10_1	1-177/177	===============	0/0	100.00	100.00	plasmidfinder	X01654
SRR3199283.fna	NODE_36_length_3934_cov_348.307	2037	2167	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR3199284.fna	NODE_39_length_9450_cov_10.659	4728	4904	ColE10_1	1-177/177	===============	0/0	100.00	100.00	plasmidfinder	X01654
SRR3199284.fna	NODE_51_length_5182_cov_165.393	1802	1932	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199284.fna	NODE_55_length_3957_cov_74.7569	1663	1793	ColRNAI_1	1-130/130	========/======	1/1	100.00	84.73	plasmidfinder	DQ298019
SRR3199285.fna	NODE_39_length_7374_cov_4.4032	4920	5562	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3199285.fna	NODE_46_length_5182_cov_266.861	697	827	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199286.fna	NODE_38_length_12379_cov_5.01388	4687	5329	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3199286.fna	NODE_39_length_10420_cov_4.36782	1170	1431	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3199286.fna	NODE_50_length_5182_cov_336.859	1802	1932	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199287.fna	NODE_27_length_46183_cov_6.23762	43995	44256	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3199287.fna	NODE_30_length_36763_cov_6.73035	2110	2752	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3199287.fna	NODE_47_length_5182_cov_252.125	1237	1367	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199288.fna	NODE_15_length_93935_cov_9.43176	61319	61460	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	100.00	plasmidfinder	AP005147
SRR3199291.fna	NODE_37_length_16934_cov_4.64394	11387	12029	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3199291.fna	NODE_44_length_5182_cov_286.592	2926	3056	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199292.fna	NODE_39_length_7858_cov_5.00595	2033	2675	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3199292.fna	NODE_48_length_5182_cov_296.204	3086	3216	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199292.fna	NODE_61_length_1770_cov_4.80889	793	1054	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3199293.fna	NODE_39_length_11158_cov_4.55562	9334	9976	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3199293.fna	NODE_40_length_10297_cov_4.64287	1880	2141	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3199293.fna	NODE_48_length_5182_cov_291.758	2997	3127	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199294.fna	NODE_37_length_17276_cov_5.20538	5248	5890	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3199294.fna	NODE_49_length_5182_cov_311.826	2335	2465	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199294.fna	NODE_66_length_1475_cov_4.48442	925	1186	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3199295.fna	NODE_37_length_12237_cov_4.79496	7068	7710	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3199295.fna	NODE_43_length_5849_cov_4.63911	2925	3186	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3199295.fna	NODE_47_length_5182_cov_187.716	1915	2045	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199296.fna	NODE_38_length_8431_cov_4.85597	4533	5175	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3199296.fna	NODE_39_length_7934_cov_4.39772	1928	2189	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3199296.fna	NODE_47_length_5182_cov_397.472	2958	3088	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199297.fna	NODE_40_length_9723_cov_4.28512	1928	2189	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3199297.fna	NODE_42_length_8929_cov_4.99137	6228	6870	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3199297.fna	NODE_46_length_5182_cov_265.424	2951	3081	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199299.fna	NODE_31_length_6034_cov_510.671	3450	3643	Col(Ye4449)_1	1-194/194	===============	0/0	100.00	80.41	plasmidfinder	FJ696405
SRR3199300.fna	NODE_44_length_5182_cov_367.083	2691	2821	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199300.fna	NODE_57_length_1953_cov_4.41457	517	778	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3199301.fna	NODE_39_length_8062_cov_4.66289	5400	6042	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3199301.fna	NODE_41_length_6257_cov_4.67993	28	289	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR3199301.fna	NODE_45_length_5182_cov_370.067	3086	3216	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3199302.fna	NODE_39_length_7595_cov_4.61127	5131	5773	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR3199302.fna	NODE_48_length_5182_cov_396.185	3079	3209	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019
SRR3205865.fna	NODE_14_length_154512_cov_8.3914	109304	109933	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205865.fna	NODE_14_length_154512_cov_8.3914	123587	124181	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3205865.fna	NODE_14_length_154512_cov_8.3914	124799	125125	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205866.fna	NODE_23_length_74716_cov_8.79722	46706	47032	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205866.fna	NODE_23_length_74716_cov_8.79722	47650	48244	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3205866.fna	NODE_23_length_74716_cov_8.79722	61898	62527	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205868.fna	NODE_10_length_169457_cov_8.65526	46706	47032	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205868.fna	NODE_10_length_169457_cov_8.65526	47650	48244	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3205868.fna	NODE_10_length_169457_cov_8.65526	61898	62527	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205869.fna	NODE_35_length_15580_cov_7.21776	5250	5809	IncFIB(K)_1_Kpn3	1-560/560	===============	0/0	100.00	98.93	plasmidfinder	JN233704
SRR3205870.fna	NODE_134_length_135_cov_20.25	26	135	ColRNAI_1	20-128/130	..======/======	1/1	83.85	82.73	plasmidfinder	DQ298019
SRR3205870.fna	NODE_48_length_6956_cov_122.675	129	578	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
SRR3205870.fna	NODE_49_length_6791_cov_21.9908	5736	6249	IncN_1	1-514/514	===============	0/0	100.00	99.81	plasmidfinder	AY046276
SRR3205870.fna	NODE_52_length_4223_cov_168.837	2567	2697	ColRNAI_1	1-130/130	========/======	1/1	100.00	82.44	plasmidfinder	DQ298019
SRR3205870.fna	NODE_56_length_2391_cov_243.093	774	904	ColRNAI_1	1-130/130	========/======	1/1	100.00	86.26	plasmidfinder	DQ298019
SRR3205870.fna	NODE_57_length_2226_cov_212.772	2081	2209	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3205870.fna	NODE_88_length_263_cov_152.184	1	110	ColRNAI_1	20-128/130	..======/======	1/1	83.85	82.73	plasmidfinder	DQ298019
SRR3205872.fna	NODE_10_length_177730_cov_16.7443	46706	47032	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205872.fna	NODE_10_length_177730_cov_16.7443	47650	48244	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3205872.fna	NODE_10_length_177730_cov_16.7443	61898	62527	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205873.fna	NODE_24_length_41503_cov_10.0591	9823	10382	IncFIB(K)_1_Kpn3	1-560/560	===============	0/0	100.00	98.93	plasmidfinder	JN233704
SRR3205874.fna	NODE_23_length_43640_cov_34.6027	5736	6249	IncN_1	1-514/514	===============	0/0	100.00	99.81	plasmidfinder	AY046276
SRR3205874.fna	NODE_31_length_7730_cov_184.175	5875	6324	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
SRR3205874.fna	NODE_34_length_4223_cov_199.094	2769	2899	ColRNAI_1	1-130/130	========/======	1/1	100.00	82.44	plasmidfinder	DQ298019
SRR3205874.fna	NODE_35_length_3350_cov_294.347	1014	1142	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3205874.fna	NODE_39_length_2391_cov_282.735	1895	2025	ColRNAI_1	1-130/130	========/======	1/1	100.00	86.26	plasmidfinder	DQ298019
SRR3205875.fna	NODE_11_length_177444_cov_13.7996	46706	47032	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205875.fna	NODE_11_length_177444_cov_13.7996	47650	48244	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3205875.fna	NODE_11_length_177444_cov_13.7996	61898	62527	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205876.fna	NODE_14_length_154830_cov_14.7089	115204	115833	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205876.fna	NODE_14_length_154830_cov_14.7089	129487	130081	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3205876.fna	NODE_14_length_154830_cov_14.7089	130699	131025	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205878.fna	NODE_17_length_53534_cov_12.9419	34923	35339	IncA/C2_1	1-417/417	===============	0/0	100.00	100.00	plasmidfinder	JN157804
SRR3205879.fna	NODE_12_length_142854_cov_17.1516	103228	103857	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205879.fna	NODE_12_length_142854_cov_17.1516	117511	118105	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3205879.fna	NODE_12_length_142854_cov_17.1516	118723	119049	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205879.fna	NODE_35_length_6773_cov_25.2615	5711	6224	IncN_1	1-514/514	===============	0/0	100.00	99.81	plasmidfinder	AY046276
SRR3205881.fna	NODE_14_length_154640_cov_11.6632	114918	115547	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205881.fna	NODE_14_length_154640_cov_11.6632	129201	129795	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3205881.fna	NODE_14_length_154640_cov_11.6632	130413	130739	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205883.fna	NODE_24_length_84579_cov_8.43487	46706	47032	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205883.fna	NODE_24_length_84579_cov_8.43487	47650	48244	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3205883.fna	NODE_24_length_84579_cov_8.43487	61898	62527	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205885.fna	NODE_10_length_177730_cov_10.097	46706	47032	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3205885.fna	NODE_10_length_177730_cov_10.097	47650	48244	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3205885.fna	NODE_10_length_177730_cov_10.097	61898	62527	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3278367.fna	NODE_22_length_41536_cov_5.77581	31122	31681	IncFIB(K)_1_Kpn3	1-560/560	===============	0/0	100.00	98.93	plasmidfinder	JN233704
SRR3278447.fna	NODE_10_length_177444_cov_12.2266	46706	47032	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3278447.fna	NODE_10_length_177444_cov_12.2266	47650	48244	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3278447.fna	NODE_10_length_177444_cov_12.2266	61898	62527	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3278448.fna	NODE_26_length_46587_cov_28.3498	365	878	IncN_1	1-514/514	===============	0/0	100.00	99.81	plasmidfinder	AY046276
SRR3278448.fna	NODE_29_length_35915_cov_15.4217	5554	5875	IncI2_1_Delta	1-316/316	========/======	1/6	100.00	97.52	plasmidfinder	AP002527
SRR3278448.fna	NODE_38_length_7780_cov_149.434	2965	3414	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
SRR3278448.fna	NODE_41_length_4223_cov_165.974	2439	2569	ColRNAI_1	1-130/130	========/======	1/1	100.00	82.44	plasmidfinder	DQ298019
SRR3278448.fna	NODE_47_length_2391_cov_220.826	1360	1490	ColRNAI_1	1-130/130	========/======	1/1	100.00	86.26	plasmidfinder	DQ298019
SRR3278448.fna	NODE_48_length_2234_cov_242.505	2081	2209	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3278449.fna	NODE_14_length_118597_cov_10.0773	2892	3521	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3278449.fna	NODE_21_length_59047_cov_10.491	46706	47032	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3278449.fna	NODE_21_length_59047_cov_10.491	47650	48244	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3278450.fna	NODE_10_length_177730_cov_14.431	46706	47032	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3278450.fna	NODE_10_length_177730_cov_14.431	47650	48244	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3278450.fna	NODE_10_length_177730_cov_14.431	61898	62527	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3278450.fna	NODE_22_length_36028_cov_18.3965	5554	5875	IncI2_1_Delta	1-316/316	========/======	1/6	100.00	97.52	plasmidfinder	AP002527
SRR3278455.fna	NODE_10_length_177444_cov_13.2719	46706	47032	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3278455.fna	NODE_10_length_177444_cov_13.2719	47650	48244	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3278455.fna	NODE_10_length_177444_cov_13.2719	61898	62527	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3278455.fna	NODE_23_length_7730_cov_41.2971	2965	3414	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
SRR3278463.fna	NODE_35_length_7780_cov_310.314	2965	3414	IncQ1_1	1-450/450	===============	0/0	100.00	100.00	plasmidfinder	HE654726
SRR3278463.fna	NODE_36_length_7041_cov_48.0029	5979	6492	IncN_1	1-514/514	===============	0/0	100.00	99.81	plasmidfinder	AY046276
SRR3278463.fna	NODE_39_length_4153_cov_343.565	1655	1785	ColRNAI_1	1-130/130	========/======	1/1	100.00	82.44	plasmidfinder	DQ298019
SRR3278463.fna	NODE_41_length_3280_cov_464.125	1655	1783	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3278463.fna	NODE_44_length_2391_cov_472.849	394	524	ColRNAI_1	1-130/130	========/======	1/1	100.00	86.26	plasmidfinder	DQ298019
SRR3278464.fna	NODE_28_length_6984_cov_40.2278	5736	6249	IncN_1	1-514/514	===============	0/0	100.00	99.81	plasmidfinder	AY046276
SRR3278464.fna	NODE_29_length_6200_cov_332.106	1	429	IncQ1_1	1-429/450	===============	0/0	95.33	100.00	plasmidfinder	HE654726
SRR3278464.fna	NODE_32_length_4223_cov_351.521	1778	1908	ColRNAI_1	1-130/130	========/======	1/1	100.00	82.44	plasmidfinder	DQ298019
SRR3278464.fna	NODE_33_length_3350_cov_526.667	1725	1853	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3278464.fna	NODE_37_length_2391_cov_485.723	1996	2126	ColRNAI_1	1-130/130	========/======	1/1	100.00	86.26	plasmidfinder	DQ298019
SRR3278465.fna	NODE_17_length_53536_cov_14.2962	34923	35339	IncA/C2_1	1-417/417	===============	0/0	100.00	100.00	plasmidfinder	JN157804
SRR3278465.fna	NODE_27_length_4289_cov_174.295	2637	2767	ColRNAI_1	1-130/130	========/======	1/1	100.00	90.08	plasmidfinder	DQ298019
SRR3278465.fna	NODE_30_length_3881_cov_235.96	2596	2749	Col156_1	1-154/154	===============	0/0	100.00	94.16	plasmidfinder	NC_009781
SRR3278465.fna	NODE_33_length_3350_cov_192.84	1626	1754	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3278465.fna	NODE_39_length_2215_cov_1091.83	1219	1451	Col(BS512)_1	1-233/233	===============	0/0	100.00	100.00	plasmidfinder	NC_010656
SRR3278465.fna	NODE_39_length_2215_cov_1091.83	1523	1715	Col(BS512)_1__NC_010656_dupe	1-193/193	===============	0/0	100.00	100.00	plasmidfinder	
SRR3278466.fna	NODE_11_length_177603_cov_8.64856	46706	47032	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3278466.fna	NODE_11_length_177603_cov_8.64856	47650	48244	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3278466.fna	NODE_11_length_177603_cov_8.64856	61898	62527	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3278469.fna	NODE_49_length_7189_cov_122.19	3877	4326	IncQ1_1	1-450/450	===============	0/0	100.00	99.78	plasmidfinder	HE654726
SRR3278469.fna	NODE_50_length_6908_cov_23.5371	5736	6249	IncN_1	1-514/514	===============	0/0	100.00	99.81	plasmidfinder	AY046276
SRR3278469.fna	NODE_58_length_2391_cov_197.09	774	904	ColRNAI_1	1-130/130	========/======	1/1	100.00	86.26	plasmidfinder	DQ298019
SRR3278469.fna	NODE_61_length_1988_cov_193.769	1650	1778	ColRNAI_1	1-128/130	========/======	1/1	98.46	81.39	plasmidfinder	DQ298019
SRR3278469.fna	NODE_80_length_640_cov_159.043	315	445	ColRNAI_1	1-130/130	========/======	1/1	100.00	82.44	plasmidfinder	DQ298019
SRR3278472.fna	NODE_12_length_177444_cov_17.0114	46706	47032	IncHI2_1	1-327/327	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR3278472.fna	NODE_12_length_177444_cov_17.0114	47650	48244	TrfA_1	2-596/596	========/======	2/2	99.66	80.37	plasmidfinder	CP11611
SRR3278472.fna	NODE_12_length_177444_cov_17.0114	61898	62527	IncHI2A_1	1-630/630	===============	0/0	100.00	100.00	plasmidfinder	BX664015
SRR4032951_contigs.fna	NODE_19_length_83100_cov_16.3175	15241	15382	IncI1_1_Alpha	1-142/142	===============	0/0	100.00	99.30	plasmidfinder	AP005147
SRR5280388.fna	NODE_16_length_91969_cov_41.4626	11229	11871	IncFIB(S)_1	1-643/643	===============	0/0	100.00	100.00	plasmidfinder	FN432031
SRR5280388.fna	NODE_16_length_91969_cov_41.4626	89908	90169	IncFII(S)_1	1-262/262	===============	0/0	100.00	100.00	plasmidfinder	CP000858
SRR5280388.fna	NODE_42_length_5182_cov_671.991	984	1114	ColRNAI_1	1-130/130	========/======	1/1	100.00	87.79	plasmidfinder	DQ298019

from abricate.

dutchscientist commented on June 12, 2024

And summary output with v0.6:

HS16119_S1_contigs.fna	3	.	.	.	.	.	.	98.46	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
HS197_S4_contigs.fna	2	.	.	.	.	.	.	100.00;100.00	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
HS36_S7_contigs.fna	3	.	.	.	100.00	.	.	100.00;100.00;100.00;83.85	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.
HS3777_S10_contigs.fna	2	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
HS51537_S13_contigs.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
HS51628_S19_contigs.fna	3	.	.	.	.	.	.	100.00	.	100.00	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
HS5256_S22_contigs.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
HS5294_S2_contigs.fna	2	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.
HS5604_S8_contigs.fna	2	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
HS61616_S11_contigs.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
HS61639_S17_contigs.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
HS61648_S23_contigs.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
HS61650_S3_contigs.fna	5	.	.	.	.	98.55	.	100.00	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
HS71540_S6_contigs.fna	2	.	.	.	.	.	.	100.00;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.67	.	.	.	.	.	.
HS71549_S9_contigs.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
HS74_S12_contigs.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
HS91540_S18_contigs.fna	2	.	.	.	.	.	.	100.00;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.67	.	.	.	.	.	.
HS91557_S21_contigs.fna	2	.	.	.	100.00	.	.	100.00;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-A1-F2L2_S3.fna	4	.	.	.	98.70	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-B3-F2F9_S15.fna	4	.	.	.	98.70	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-B4-F2F12-M4710_S10.fna	4	.	.	.	98.70	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-B5-F2F11_S2.fna	4	.	.	.	98.70	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-B6-F2L6_S4.fna	6	.	.	.	98.70	.	.	100.00	100.00	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
NC-B8-F2F3_S1.fna	4	.	.	.	98.70	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-C5-F2S17-M4710_S12.fna	4	.	.	.	98.70	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-E4-F1L8_S16.fna	4	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	99.61	.	.	100.00	.	.	.	.	.	.	.	100.00	.	.	.	.
NC-F0077_S6.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-F0081_S16.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-F0088_S8.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-F0095_S14.fna	2	.	.	.	.	.	.	100.00	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-F0305_S13.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-F1F4_S9.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-F1F5_S3.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-F1F6_S5.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-F1I8_S1.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-F1L3_S11.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-F1L4_S7.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-I0309_S2.fna	3	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	100.00	.	.	.	.	.
NC-I0328_S4.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-L0052_S12.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-L0085_S10.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-L0300_S15.fna	3	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	99.60	.	.	.	.	99.61	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-NCF3D0-L2_S5.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
NC-NCF3D0-L5_S9.fna	1	.	.	.	.	.	.	98.46;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-NCF3D0-L8-M4710_S2.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-NCF3D14-14-M4710_S4.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-NCF3D21-4-M4710_S6.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-NCF5D0-A4_S12.fna	2	.	.	.	.	.	.	100.00;100.00;100.00;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.67	.	.	.	.	.	.
NC-NCF5D0-L4_S14.fna	2	.	.	.	.	.	.	100.00;100.00;100.00;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.67	.	.	.	.	.	.
NC-NCF6D0-A13-M4710_S14.fna	1	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-NCF6D0-A18-M4710_S16.fna	1	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-NCF6D0-A19_S8.fna	1	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-NCF6D0-A20_S10.fna	1	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-NCF6D0-A4-M4710_S8.fna	1	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-NCF6D0-A8_S6.fna	5	.	.	.	.	.	.	90.77	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	100.00	.	90.37	100.00	.	.
NC-NCF6D0-L8_S11_edited.fna	1	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-NCF6D0-L9_S13.fna	1	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-PS091_S11_contigs.fna	4	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	100.00	.	.	99.66	.
NC-PS134_S14_contigs.fna	8	100.00	100.00	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	100.00	.	.	.	.	.	.	.	100.00	.	.	99.66	.
NC-PS137_S17_contigs.fna	4	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	100.00	.	.	99.66	.
NC-PS188_S20_contigs.fna	5	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	100.00	.	.	.	.	.	.	.	100.00	.	.	99.66	.
NC-S1151_S23_contigs.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-S1163_S3_contigs.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-S1192_S6_contigs.fna	1	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-S1347_S21_contigs.fna	2	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	100.00	.	.
NC-S1349_S24_contigs.fna	2	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	100.00	.	.
NC-S1429_S4_contigs.fna	1	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-S1432_S7_contigs.fna	4	.	.	.	.	.	.	100.00;98.46	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
NC-S1433_S10_contigs.fna	4	.	.	.	.	.	.	100.00;98.46	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
NC-S1435_S13_contigs.fna	2	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.
NC-S1437_S16_contigs.fna	1	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-S1439_S18_contigs.fna	1	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-S1744_S20_contigs.fna	2	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.
NC-S1763_S5_contigs.fna	2	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.
NC-S442_S8_contigs.fna	3	.	.	.	.	.	.	100.00;100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-S617_S11_contigs.fna	2	.	.	.	.	.	100.00	100.00;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-S726_S14_contigs.fna	1	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-S801_S17_contigs.fna	1	.	.	.	.	.	.	83.08;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-S802_S19_contigs.fna	1	.	.	.	.	.	.	100.00;83.08	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-S803_S21_contigs.fna	1	.	.	.	.	.	.	100.00;83.08	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NC-S968_S15_contigs.fna	2	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR1815213.fna	2	.	.	.	.	.	.	83.85	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.67	.	.	.	.	.	.
SRR1815214.fna	2	.	.	.	.	.	.	83.85	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.67	.	.	.	.	.	.
SRR1815218.fna	2	.	.	100.00;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
SRR1815231.fna	2	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.67	.	.	.	.	.	.
SRR1815232.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.67	.	.	.	.	.	.
SRR1815233.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.67	.	.	.	.	.	.
SRR1815234.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.67	.	.	.	.	.	.
SRR1815263.fna	3	.	.	.	.	.	.	100.00;100.00;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	100.00	.	.
SRR1815272.fna	1	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR1815273.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.67	.	.	.	100.00	.	.
SRR1815275.fna	2	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
SRR1815277.fna	2	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.47
SRR1815278.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	99.84	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR1815279.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	99.84	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR1815280.fna	2	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	98.57
SRR1815281.fna	1	.	.	.	.	.	.	100.00;100.00;98.46	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR1815283.fna	1	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR1815285.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	98.57
SRR1815286.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.
SRR1815288.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	98.67	.	.	.	.	.	.
SRR1815291.fna	2	.	.	100.00;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
SRR1815293.fna	2	.	.	100.00;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
SRR1815296.fna	4	.	.	.	100.00	.	.	90.77	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.
SRR1815297.fna	2	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.
SRR1815299.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3168989.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3168990.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3168991.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3168992.fna	1	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3168993.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3168994.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3168995.fna	2	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3168996.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3168997.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3168998.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3168999.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3169003.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
SRR3169004.fna	1	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3169005.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3169006.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3169007.fna	1	.	.	.	.	.	.	100.00;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3169008.fna	2	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3169009.fna	2	.	.	.	.	.	100.00	100.00;98.46	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3169010.fna	2	.	.	.	.	.	100.00	100.00;98.46	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3169011.fna	2	.	.	.	.	.	100.00	100.00;98.46	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199279.fna	2	.	.	.	.	.	100.00	100.00;98.46	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199280.fna	2	.	.	.	.	.	100.00	100.00;98.46	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199281.fna	2	.	.	.	.	.	100.00	100.00;98.46	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199282.fna	3	.	.	.	.	.	100.00	100.00;98.46	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199283.fna	2	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199284.fna	2	.	.	.	.	.	100.00	100.00;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199285.fna	2	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199286.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199287.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199288.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199291.fna	2	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199292.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199293.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199294.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199295.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199296.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199297.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199299.fna	1	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199300.fna	2	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199301.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3199302.fna	2	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3205865.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3205866.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3205868.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3205869.fna	1	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3205870.fna	3	.	.	.	.	.	.	83.85;100.00;100.00;98.46;83.85	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	100.00	.	.	.	.	.	.	.
SRR3205872.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3205873.fna	1	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3205874.fna	3	.	.	.	.	.	.	100.00;98.46;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	100.00	.	.	.	.	.	.	.
SRR3205875.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3205876.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3205878.fna	1	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3205879.fna	4	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	100.00	.	.	.	.	.	.	.	99.66	.
SRR3205881.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3205883.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3205885.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3278367.fna	1	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3278447.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3278448.fna	4	.	.	.	.	.	.	100.00;100.00;98.46	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	100.00	.	100.00	.	.	.	.	.	.	.
SRR3278449.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3278450.fna	4	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	100.00	.	.	.	.	.	.	.	.	.	99.66	.
SRR3278455.fna	4	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	100.00	.	.	.	.	.	99.66	.
SRR3278463.fna	3	.	.	.	.	.	.	100.00;98.46;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	100.00	.	.	.	.	.	.	.
SRR3278464.fna	3	.	.	.	.	.	.	100.00;98.46;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	95.33	.	.	.	.	.	.	.
SRR3278465.fna	5	100.00	100.00	.	100.00	.	.	100.00;98.46	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SRR3278466.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR3278469.fna	3	.	.	.	.	.	.	100.00;98.46;100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	100.00	.	.	.	.	.	.	.
SRR3278472.fna	3	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	100.00	.	.	.	.	.	.	.	.	.	.	.	99.66	.
SRR4032951_contigs.fna	1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.
SRR5280388.fna	3	.	.	.	.	.	.	100.00	.	.	.	.	100.00	.	.	.	100.00	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

from abricate.

tseemann commented on June 12, 2024

The old method was wrong. The new method is the only correct way I can do it while maintaining backward compatibility.

The problem is when one of samples has NO AMR GENES in it. You can an empty file. There are no rows in it to tell you which file it originally referred to, as there is nothing in COLUMN 1 of it.

This causes all sorts of weird behaviour.

I did document it briefly: https://github.com/tseemann/abricate#combining-reports-across-samples
But I did not make it clear on the Release Notes.

So the only way I could resolve it was to use the filename of the result as the FILE column.

I know this is not what you want or may expect, but I can't think of another way to do it without changing the output of abricate to record the filename even with no hits.

Although it just occured to me to put it in the head as COL 1, ROW 1.

I'll think about it for release 0.8. The interface can change at any time until 1.0.

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dutchscientist commented on June 12, 2024

Just to make sure I understand: you are trying to include all tested files in the Summary? I'll look at it again, but will save the 0.6 binary as that summary output was very useful already.

But I am still confused as the current summary does not give me any information anymore, just a single line. I assume the situation where one or more files does not have any AMR or tested genes is more common than vice versa.

Is it an idea to add to the output of every tested genome a "NONE" if nothing found, meaning every genome is included? Or I could just add a 16S fragment to every database which should always give a result with genomes.

from abricate.

tseemann commented on June 12, 2024

I'm not sure what is going on. The above examples are hard to read, as they wrap. Can you zip the output files and email me?

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dutchscientist commented on June 12, 2024

Will do :) Have just sent you: - output from a run of Salmonella's with plasmidfinder database - summary made with version 0.6 - summary made with version 0.7 Have made sure all the dependencies are installed, got it via the git route, fresh install. The 0.6 was installed from the tar.gz file on the github site.

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dutchscientist commented on June 12, 2024

Glad we are on the same page again, yes, I used *.fna. Pesky users doing something different ;)

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tseemann commented on June 12, 2024

No matter what I do there is the problem that if you do abricate *.fa > out.tab && abricate --summary out.tab > summary.tab then you will never know if one of your .fa files had NO AMR GENES.

That said, I am using the out.tab as the filename instead of the first column #FILE name. I should change that behaviour. I might solve it by, if you only give 1 input file to summary, it will use #FILE as the key, and if you give more, it will use the $ARGV filenames.

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tseemann commented on June 12, 2024

@dutchscientist i have now pushed this new fix. i called the case where you have only 1 input file that was run on multipe FASTA files, Dutch mode :)

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dutchscientist commented on June 12, 2024

Great, thanks. Will try soon :) Sent via BlackBerry Hub+ Inbox for Android<http://play.google.com/store/apps/details?id=com.blackberry.hub> From: [email protected] Sent: 10 September 2019 9:59 am To: [email protected] Reply to: [email protected] Cc: [email protected]; [email protected] Subject: Re: [tseemann/abricate] [bug] Summary option broken in version 0.7 (#32) @dutchscientist<https://github.com/dutchscientist> i have now pushed this new fix. i called the case where you have only 1 input file that was run on multipe FASTA files, Dutch mode :) — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#32?email_source=notifications&email_token=ACPR5UGNUHQHSQSN3AAISHDQI5OV3A5CNFSM4DZMGXQKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOD6KMAHY#issuecomment-529842207>, or mute the thread<https://github.com/notifications/unsubscribe-auth/ACPR5UAO3WZJ6SAPZFEN7O3QI5OV3ANCNFSM4DZMGXQA>.

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[bug] Summary option broken in version 0.7 about abricate HOT 11 CLOSED

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