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aedes_demography

Scripts for Demographic history and the efficacy of selection in the globally invasive mosquito Aedes aegypti

angsd-wrapper

Utilities for analyzing next generation sequencing data

bioinformatics_club

notes from workshop

bioinformaticsutils

general scripts for bioinformatics

bis180l_web

Course Website for UC Davis BIS180L

crossovermeme

cv

degeneracy

4folds and 0folds

eve102

fijiensis

fijiensis recombination hotspot work

genomesize

Failed attempt to predict genome size with GBS sequencing data

gerpplusplus

GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.

gh-usernames

repository to illustrate forking and to collect github usernames

grandiflora_recombination

recombination mapping project in Capsella grandiflora

hapcut

inbreeding

Notes on calculating inbreeding using ngsF

jkreinz.github.io

kent2016glumaepatula

random rice project things

millennial

A minimalist Jekyll theme for running an online publication

minsum

scripts and description of methods from Sas et al.

msr

Process MS results in R, in a tidy way

phasedibd

Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)

pi-between

Using ANGSD and Python/R to calculate and plot pi-between in windows along the genome

scripts

mostly python scripts

shiny_popgen

Shiny apps for teaching Population Genetics

spacemix

thetas_and_tajimas_d

Notes on calculating thetas and tajD using ANGSD/angsd-wrapper

tvkent.github.io