Name: tweep
Type: User
Company: Genentech, EMBL, Sanger, Max Planck Institute.
Bio: Working on large scale data processing within the bioinformatics domain. Data makes my life go round, and my code helps making it manageable.
Location: United States
tweep's Projects
The open source version of the Amazon ECS developer guide. You can submit feedback & requests for changes by submitting issues in this repo or by making proposed changes & submitting a pull request.
An Arduino project to emulate the whack-a-mole game using vibration sensors, LEDs, sound and poofers.
This library creates menu systems primarily useful for 16x2 or 16x4 LCD displays.
A collection of useful CloudFormation templates
Genomics Workflows on AWS
cBioPortal for Cancer Genomics
AWS CloudFormation Templates
A Docker/LXC, database-free, lightweight container performance monitoring solution, perfect for ephemeral containers (e.g. containers used for DevOps automatic testing). Can also be used with InfluxDB and Grafana.
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Development env for Cromwell WDL workflows
A data resource browser and selector based on DataTables. Used by igv applications for selecting files from ENCODE and other data resources.
:whale: ReadTheDocs (RTD, read the docs) in docker
Backup of my dotfiles
image to extend ehive-base-ubuntu-18
Basic docker file for Sentieon FEB ( only installs required programs )
Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
Slurm Meadow for Ensembl Hive
Job management for the Ensembl Genebuild pipeline
The Ensembl Variation Perl API and SQL schema
The main FastLED library (successor to FastSPI_LED). Please direct questions/requests for advice to the g+ community - http://fastled.io/+ - we'd like to keep issues to just tracking bugs/enhancements/tasks. *NOTE* library work is currently on hold - see https://plus.google.com/102282558639672545743/posts/JQKcujjaXXC for details.
Graphical interface for the eHive workflow manager
IGV Web App
UI widgets for igvteam applications
Description / example how to index a bunch of CSV files with the Solr DataImportHandler and generate one solr document per CSV line
Quick example how to index the XML files from clinicalTrials.gov with SOLR
private repo for notes and projects