Comments (2)
Sure. My email is [email protected] you can contact me via email and we can examine together. Actually, some of my classmate already reproduce the results in the paper. So I think it is weired.
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Also I attached the RCSB training data(train_PDB_data_pos) on github now. I'm really curious why your result is inconsistent with mine and I'm looking forward to investigate the detailed reason. PLEASE provide more information about your results. We can directly discuss here or through emails.
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Related Issues (20)
- Could you check PLIPv2.2.2 output vs v1.4.2? current codes only for PLIPv1.4.2? HOT 1
- About blast database HOT 1
- Questions about creating "query_peptide.fasta" and "target_peptide.fasta" HOT 3
- step2_pepBDB_pep_bindingsites.py 'df_part_all' is not defined HOT 1
- error in preprocessing features HOT 3
- peptide_dense_feature_dict generated by step3 has only two features per AA whereas given example data has three features per AA
- interpretion of results HOT 1
- error in CAMP_BS.h5 modelling HOT 5
- We couldn't run program HOT 3
- Failed to predict protein-peptide interactions in PPD-bench HOT 3
- Unknown loss function: conditional_BCE; predict_CAMP.py HOT 2
- Request for Guidance in Step 1 to Step 3 of step2_pepBDB_pep_bindingsites.py
- can not load 'CAMP_BS.h5' successfully HOT 4
- problem unpickling CAMP_pytorch files HOT 4
- analyzed file generated by PLIP HOT 1
- Step 4 of step1_pdb_process.py
- "query_peptide.fasta" and "target_peptide.fasta" HOT 2
- How to generate 'pep_concat_seq' and 'prot_concat_seq' in my own camp input data
- The peptide-binding residue prediction in CAMP_train_CV.py
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