Comments (1)
Hi,
What's your version of SSPro? The version I used to calculate the secondary structures can solve cases that have lengths shorter than 30. The version information is as follow:
Author(s) : Christophe Magnan ([email protected])
Copyright : Institute for Genomics and Bioinformatics
University of California, Irvine
Modified : 2018/11/24
====================================================================================================
Method Description
SCRATCH-1D is a suite of one-dimensional predictors included in the long-established and widely used
SCRATCH suite of predictors developed by the Institute for Genomics and Bioinformatics (IGB) of the
University of California, Irvine (UCI) : http://scratch.proteomics.ics.uci.edu
SCRATCH-1D currently includes the following predictors and tools:
- SSpro Release 5.2 Protein secondary structure prediction (3-class)
- SSpro8 Release 5.2 Protein secondary structure prediction (8-class)
...
====================================================================================================
Release Notes
====================================================================================================
Version 1.2 (2018)
Author : Christophe Magnan
Description : update of the package databases
Comments : PROFILpro protein database UNIREF50 updated
HOMOLpro template database pdb_full updated
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