Comments (2)
[2023-04-17 18:28:01,630][sheepdog.api][ INFO] Creating new dbGaP Cross Referencer
[2023-04-17 18:28:01,631][sheepdog.api][ INFO] Entering <sheepdog.transactions.upload.transaction.UploadTransaction object at 0x7fbbc70feb70>
[2023-04-17 18:28:01,637][sheepdog.api][ DEBUG] Identified experimental_metadata node as a data file node
[2023-04-17 18:28:01,682][sheepdog.api][ DEBUG] Creating new ExperimentalMetadata
[2023-04-17 18:28:01,710][sheepdog.api][ DEBUG] Setting properties on <ExperimentalMetadata(805fd502-778a-4863-9c49-f18b767aea94)>
[2023-04-17 18:28:01,710][sheepdog.api][ DEBUG] <ExperimentalMetadata(805fd502-778a-4863-9c49-f18b767aea94)>: setting null system property 'state' to validated
[2023-04-17 18:28:01,711][sheepdog.api][ DEBUG] <ExperimentalMetadata(805fd502-778a-4863-9c49-f18b767aea94)>: setting null system property 'file_state' to registered
[2023-04-17 18:28:01,743][sheepdog.api][ ERROR] 403 Client Error: username / password mismatch for url: http://indexd-service/index/
Traceback (most recent call last):
File "/sheepdog/sheepdog/transactions/upload/sub_entities.py", line 270, in flush_to_session
self._register_index()
File "/sheepdog/sheepdog/transactions/upload/sub_entities.py", line 337, in _register_index
authz=authz,
File "/sheepdog/sheepdog/transactions/upload/sub_entities.py", line 718, in _create_index
return self.transaction.index_client.create(**kwargs)
File "/usr/local/lib/python3.6/site-packages/indexclient/client.py", line 286, in create
auth=self.auth,
File "/usr/local/lib/python3.6/site-packages/indexclient/client.py", line 40, in timeout
return func(*args, **kwargs)
File "/usr/local/lib/python3.6/site-packages/indexclient/client.py", line 408, in _post
handle_error(resp)
File "/usr/local/lib/python3.6/site-packages/indexclient/client.py", line 34, in handle_error
resp.raise_for_status()
File "/usr/local/lib/python3.6/site-packages/requests/models.py", line 960, in raise_for_status
raise HTTPError(http_error_msg, response=self)
requests.exceptions.HTTPError: 403 Client Error: username / password mismatch for url: http://indexd-service/index/
[2023-04-17 18:28:01,748][sheepdog.api][ INFO] <sheepdog.transactions.upload.transaction.UploadTransaction object at 0x7fbbc70feb70>: committing
[2023-04-17 18:28:01,771][sheepdog.api][ INFO] <sheepdog.transactions.upload.transaction.UploadTransaction object at 0x7fbbc70feb70>: rolling back transaction
10.104.0.112 - - [17/Apr/2023:18:28:01 +0000] "PUT /v0/submission/program1/project1/ HTTP/1.0" 400 845 "https://gen3-helm-sk01.nygenome.org/program1-project1" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/112.0.0.0 Safari/537.36" "108.71.139.184, 34.160.81.162"
[2023-04-17 18:28:07,341][sheepdog.api][ DEBUG] Set user harakiri in 599 seconds.
from gen3-helm.
Also, what is the right URL for indexd
is it http://indexd-service or http://indexd-service/indexd ?
from gen3-helm.
Related Issues (11)
- nginx unable to retrieve schema.json
- Possible misconfigured in nginx.conf leading to null `user_id` value
- [Error] Unable to deploy after several revisions - Kubernetes secret can hold 1048576 bytes at most
- Read me instrucion on helm deployment are not detailed.
- Configure securityContext for containers HOT 1
- Follow basic instruction from readme but still not able to deploy HOT 4
- Duplicate keys in sheepdog deployment yaml HOT 1
- Duplicate key terminationGracePeriodSeconds in wts deployment HOT 1
- Duplicate env section in fence presigned-url-fence.yaml HOT 2
- Duplicate keys PYTHONPATH in fence/templates/useryaml-job.yaml HOT 1
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from gen3-helm.