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calcium

Coleman lab calcium image analysis library for Python

calcium-imaging

Misc code for analyzing and visualizing two-photon calcium data

calcium_functions

Functions for processing 2p ca-imaging data based on the 'calcium' library

calcium_seed

Seed-correlation code from JT

cellmagicwand

Python implementation of ImageJ Cell Magic Wand tool

colemanstructuralimaging

d_code

2Photon Imaging and Electrophysiology Analysis code for the Datta Lab @ HMS

ebi

fijibin

Latest Life-Line version of Fiji for easy inclusion in python projects.

ijroi

Reads ImageJ ROI files into numpy arrays.

ledcontroller

GUI for controlling LED stimulus experiment

matlab-stuff

Coleman lab - misc matlab code

mcculw

MCC Universal Library Python API for Windows

moco

motion correction

motiontracker

Python Script to track motion using OpenCV3

motiontracker_jec

Basic motion tracking in ROIs from Wu

nmcoop_shared

Shared Jupyter notebooks and Python scripts

operant

psychopy-scripts

Scripts etc for use with PsychoPy

py

Repository to store sample python programs for python learning

pyimagej

Use ImageJ from Python

python-stuff

collection of scripts and functions used by the lab

python-tracking-code---black-mice

Video tracking code

python-tracking-code---white-mice

qt_usbdaq_project

GUI to interact with the 1208-FS USBDAQ

raspberry-pi-python-scripts

read-roi

Read ROI files .zip or .roi generated with ImageJ.

srp_old-fork

SRP GUI for Python

tktemplates

Collection of tk quickstart templates

tracking_vor_redux2