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2022-mcf10a-cancer-progression

bio-scripts

collection of scripts for bioinformatic analysis

bioinfo_scripts

Misc scripts than can be useful for bioinformatics

bioinfutil

Regularly used bioinformatics script for different purposes

bulk-hic-analysis

bulk hic analysis code (bash & python)

cancer_notes

A continually expanding collection of cancer genomics notes and data

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

codespringlab

Collection of bioinformatics pipelines and scripts for Cold Spring Harbor Laboratory created by BSR (Bioinformatics shared resources)

crc

custom_scripts

General repository with custom scripts for data processing, bioinformatic workflows and downstream analysis

diffhictutorialbiocasia2018

Bioconductor Hands-on Training Day workshop "Differential analysis of HiC data with diffHic".

fuc

Frequently used commands in bioinformatics

hic

Guides for processing HiC data

hic-data-analysis

General analysis of HiC data, including compartment A/B, domains and loops.

hic-data-analysis-bootcamp

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

hic-pipeline

HiC uniform processing pipeline

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hic_data

A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

hic_pipelines

Pipelines for processing HiC data

hic_scripts

HiC processing scripts used in the center.

hic_tools

A collection of tools for Hi-C data analysis

hiceekr

R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface

juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

mcf10apromoteranalysis

Processing scripts for ChIP/RNA/HiC-Seq data from MCF10A cells and derivative cell lines

mustache

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

ngs-analysis

二代测序数据分析

ngspipe2go

a set of NGS pipelines

pdx-hic_processingscripts

PDX Hi-C data processing scripts

pdx_decitabine_3depigenome

pdxhic_supplemental

Supplemental scripts for the PDX Hi-C paper