ustcjyh Goto Github PK

bms038_analysis

Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization

cellphonedb

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

cellrank_reproducibility

CellRank's reproducibility repository.

celltypist

A tool for semi-automatic cell type annotation

cookbook-for-r-chinese

:books:Cookbook for R 中文翻译

crc_scrnaseq

Single-cell and spatial analysis reveal interaction of FAP+ fibroblasts and SPP1+ macrophages in colorectal cancer

cytospace

CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data

deposition_kirchhammerstm2022

Deposition of code for the manuscript of Kirchhammer N. et al in Science Translational Medicine in 2022

foundations-for-analytics-with-python

graphst

hgda

HGDA_cellphoneDB

immuneresistance

This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".

intror

这是一本中文 R 语言入门书，基于最新 tidyverse 包。

renaltumor

Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma

sanbomics_scripts

Python单细胞复现2022

sc-gc

scRNA-seq of gastric tumor

scrnatoolvis

Useful functions to make your scRNA-seq plot more cool!

scvelo_notebooks

ustcjyh

Config files for my GitHub profile.