bayou2OUwie error about bayou

[uyedaj]

Hi Cody,
bayou2OUwie requires that you only provide it a single set of parameters rather than the full posterior. For example, you could use the function pull.pars to pull out a particular generation of the MCMC and return a bayou parameter list. Alternatively, you could use the function shiftSummaries to return a bayou parameter list for all shifts above a certain posterior probability (pp.cutoff). For example:

pp <- pull.pars(150001, chain.fit) # Get the last generation of the MCMC parameters
 bayou2OUwie(pp, fit.tree, fit.sorted2)

#OR

pp <- shiftSummaries(chain.fit, mcmc=your.mcmc.object, pp.cutoff=0.3)$pars
bayou2OUwie(pp, fit.tree, fit.sorted2)

[coyotree]

Thank so much for the clarification!