GithubHelp home page GithubHelp logo

Evangelos Karatzas's Projects

arena3dweb icon arena3dweb

Interactive 3D visualization of multilayered networks.

disease-drug-score icon disease-drug-score

We create a graph using the free online databases DisGeNET and DGIdb. The user is able to execute the R code with one argument (disease name as found in the DisGeNET_xxxxxxxx.txt) in order to find out a sorted list of potential related drugs through the common disease-drug genes.

druglikeness icon druglikeness

This R script receives drug smiles per lines as an input and prints/returns the drug violations per drug/rule in a 2D matrix.

foldcomp icon foldcomp

Compressing protein structures effectively with torsion angles

geo-merge-id-gene icon geo-merge-id-gene

This R script uses two files from a GEO dataset as inputs, the series matrix and the platform annotations files and returns a .csv file with the intitial series matrix columns as well as their respective gene symbols.

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

pathwalks icon pathwalks

PathWalks is a random walk based algorithm where a walker crosses a pathway-to-pathway network under the guidance of a disease-related map. The latter is a gene network that we construct by integrating multi-source information regarding a specific disease. The most frequent trajectories highlight communities of pathways that are expected to be strongly related to the disease under study.

pathwalks_parallel icon pathwalks_parallel

Multi-thread PathWalks based on number of input cores and total steps per walker.

platform_parse icon platform_parse

Parses MicroArray Platform into a matrix of two columns: ID - GeneSymbol

randomwalk-bionetwork icon randomwalk-bionetwork

Starting from a specific disease, the user is allowed to command random walkers to explore a multi level network of their own input choosing and are returned an edgelist with the walked edges and their aggregate step count values.

test-datasets icon test-datasets

Test data to be used for automated testing with the nf-core pipelines

victor icon victor

VICTOR: A visual analytics web application for clustering comparison

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.